BAC Information

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BAC

Clone NameMSMg01-083B12
Chromosome13 (Build37)
Map Location 70,116,596 - 70,116,821
singlet/doubletsinglet
Overlap genenone
Upstream geneAdcy2, LOC218332, Pols, A530095I07Rik, Srd5a1, Nsun2, LOC100042260, 3110006E14Rik, 4930547H16Rik, Med10
Downstream geneEG620143, LOC100042291, 4930520P13Rik, EG633042, BC018507, EG620473, Adamts16, 8030423J24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-083B12.T7 (MSMg01no083_b12.b1)MSMg01-083B12.TJ (MSMg01no083_b12.g1)
ACCAG303308AG303309
length732737
length of high quality
(start - end)
226 (67 - 292)194 (68 - 261)
definitionCHROMAT_FILE: MSMg01no083_b12.b1 PHD_FILE: MSMg01no083_b12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:43 2005CHROMAT_FILE: MSMg01no083_b12.g1 PHD_FILE: MSMg01no083_b12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXCTATTCCAGAAGATCCGCGGAATTCAC
TTTTGATTCAGGAAGATGTTAAAGCATAGGAAAGCTCTACTATTTAAAGA
CAATGTCTAAGCTCATCCAGAGCTTTCAGACCACGTTCTGTGGGGCCTGG
AGCCAGTGGCATAGCATGAGCTTCCTGGGGTCTGAGGTTAGAGGCACAGT
ATGGGTTTCCTGGCTCATCCACATAGTGTGGGCTTCCTCTGGGCTGCTTT
ATTATTTGTACTTTATAAGCAACTCAATGAGTCCTCTGTCTCATCAGCAT
TGCGAGCCTCTACCCTTTTTTGTATGCGAGTCACTGGTTACCCTCACCTG
CACCCATGTTTCTACACCGCTCTGCATGGTCTCGATCTAAGTACTTTTCT
CCCATTGTTTTGGCCTACTATTTGTCCTCAGTTGCTGACCTTCCCCCTTT
GCACGATGATCTCTCTTTTTCTTTCTTTCCTAAATTGTCTCTCCATTCCT
GTCCTATGCTTTATGATAACTGTCGTCTTCCGATACTCACGTATATCCTT
TAGATTTCGCTCTTCTCTTGACTCACTTCTCTTTATATATTTTATAGAGT
TTATTTTTTATTTATAATCTATGCTTGTAATTGGTCCCATATTGTTATAG
TTTTCTAAATAATCCTCCCTTTTTTTAATTCTACCTTCACTTATTATTGT
TACTTTTTTTTTACTTCTTTTTATTATTATAC
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCTGAAATTCAGTTGGGAACACAAACGTAAGTCCACACAT
GGACATCTATTTTGATAAAGAAGCCAGAAATGAACACTGGTGTGAAAGAA
GACAGCATCTCCAACAAATGGTGCTGGCCGAACTGAGTGGCTTTATGTAG
AAGAATGCAAATAAACCCATACTTATCATTCTACACAAAAATCAACCCCA
ACCGTATCAAAGAGATCATTGTTAGGCCAGATGTGAAAGAAAATAAGGTG
GAAAACTGCTCTGAACTCTTATTTTTCGGAGACGACTTCCTGAATAGAAC
ACCAGCAGCTCTCACACTACTATCTACCATTAATAAATGAAACCTCATGA
AACTGATATGTTTTTGTGAGGTGTTATTGAATCATCACCAGGATCTTTCA
TAATCCTCACTACTTATAAGATTTACCCCAAATCCACCTCCTGACCTAGT
GCTAATACCCTATATTTATCTATATCTCCAGATACTTATACTCCATCTAT
TATTATATTTCTTTTGAATATTAGGGTACAGATCTATACCGAATAATACC
TCCATTAACGAATTCCCTATTGGTTTAATATATCCCTTTATTAAATGTTT
TAACTTTTTTATCCTCTTGTTAAATGTTTTCTCCCTGTCCTTTTGAGATC
TCACTCAATACCCATTAATAAGGTCTAAAATCCTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no083_b12.b1 MSMg01no083_b12.b1 CHROMAT_FILE:
MSMg01no083_b12.b1 PHD_FILE: MSMg01no083_b12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:43 2005
         (226 letters)



>mm_chr13_70116396_70117021
          Length = 626

 Score =  398 bits (206), Expect = e-115
 Identities = 221/226 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgttaaagcataggaaagctctactatttaaagacaatgtctaagctcatccagagcttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tgttaaagcataggaaagctctactatttaaagacaatgtctaagctcatccagagcttt 367

                                                                       
Query: 61  cagaccacgttctgtggggcctggagccagtggcatagcatgagcttcctggggtctgag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 cagaccacgttctgtggggcctggagccagtggcatagcatgagcttcctggggtctgag 307

                                                                       
Query: 121 gttagaggcacagtatgggtttcctggctcatccacatagtgtgggcttcctctgggctg 180
           |  ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 306 gcaagaggcacagtatgggtttcctggctcatccacatagtgtgggcttcctctggtctg 247

                                                         
Query: 181 ctttattatttgtactttataagcaactcaatgagtcctctgtctc 226
           |||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 246 ctttattatttgtactttataagcaactcagtgcgtcctctgtctc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 226
Length of database: 626
Length adjustment: 9
Effective length of query: 217
Effective length of database: 617
Effective search space:   133889
Effective search space used:   133889
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)