BAC Information

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BAC

Clone NameMSMg01-084A08
Chromosome13 (Build37)
Map Location 58,597,873 - 58,749,107
singlet/doubletdoublet
Overlap geneLOC100041086, Slc28a3
Upstream geneSpock1, Klhl3, Hnrpa0, 5133401N09Rik, Ubqln1, LOC671252, Gkap1, Kif27, Hnrpk, Rmi1
Downstream geneLOC100041510, LOC435361, Ntrk2, LOC100041533, Agtpbp1, Mak10, Golph2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-084A08.T7 (MSMg01no084_a08.b1)MSMg01-084A08.TJ (MSMg01no084_a08.g1)
ACCAG303988AG303989
length740710
length of high quality
(start - end)
372 (39 - 410)290 (73 - 362)
definitionCHROMAT_FILE: MSMg01no084_a08.b1 PHD_FILE: MSMg01no084_a08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:33:56 2005CHROMAT_FILE: MSMg01no084_a08.g1 PHD_FILE: MSMg01no084_a08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:33:56 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,748,743 - 58,749,107)(58,597,873 - 58,598,142)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAGAGGATCCGCGGAA
TTCAGGGGAGATCACGCAAAGTGTAGTGTAGAAAATGAGCAAATTTTGCT
GCAGAAAAAAAGGGGGACACGGGAGCCTTTTATAGCTTTTTCTCTGATGG
TCCCCTTAAGCCTGGACTCCCAATTGCTTGCTCAACTCATTCATTTTACA
CATGAAAGGAGAGATGACACAGTCTGGTGTCTGCGGTGGCTGAAGGAAGG
GGTACAGATGCCCCTCCTTACACTGTAAAATGACTCCTGGGGGCCACTAC
AGAAAACCACAGGCAGGCAAAGTGCACAGTTGTGTGCAAGGCATTCGCAA
GGGATGAGTCTACCACCCGCCTCCAGCACCCATAGCTCAGGGCTGGAAAG
ATCCTAAGAGGCAGAGGTCTGCATAGTTTGTTGCGTGGTTGGGTCTCAGA
TAGATGTTAGACACTACACTCATGAAGTCTCACCACGTGATTGTCCCAAC
GTGAGCTGGAAAATGAACAAAGCCATCTGGAAAACGGCCCAAACTGGATA
CAACTCTTATTTCCTCCACCTTTTCCCACCACCAATAAATATCCGGCCTC
TTTTTTATTTTACCCCCTTTTTTCTTTTATCCAAAAAAATACCCTCTCCC
TCTCCTTTTCCTTTGGCGGTCCTCTTTTATTTATCTCCAATCCCCGCTTT
TTTGTTCTCTCCACCTCAATATTTTTTCCCATCACTCCCN
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCACTCACAAATCCACCCACTCAGGCCTC
GTTCTCTCTCATAGATCTGCATGCCTGACATTGTCTAGCGATGAATTCCC
CCCTCCCACATGGAGTCTTCCCAGGACAGCAGCACCAGAACGCAATGTCT
TTCTCTGAATTTATATCCTATGGTGTGTACCTGACTTCTAATCTATGACG
TGTGTCCATGCCTTGCTGTGACAATGAGATGACAAAGTTCTTGTGAACCT
GTCATTGTCATCTCTGCTCCCTCAGTATGGAGGGTCCACTGATGGGGATT
TACTGACTGTGGCCGCGTCTCACGTGGATCTCACTGTTAGATCTGAGGCC
CCCAAGAGCGTATTCTGGTTCGGAGTCTGTTTAGACTGCTCCTGCACGGT
ACAGCCCTCCCTGTTCTGTTCTGCGTTAAGTGCTCAGTATTTATAGAGCA
TGTTCAGCATTTTGAGTGTAGTCTGTCACATTCTCCACCACCTAAAGCAC
TCTCTGAGTTCACAAAGATGTATTGTTTTGTATGTCAAGATATTAATGTC
ACAGTCAGTGTCACCCCATATTACTACGTCCCGCTTGCTTACAAAGTTTT
GTGCCGTTTTATCCCCCCCCATAACTTAATTCCTGTATCCCTTTTACTTT
ATAGTAATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no084_a08.b1 MSMg01no084_a08.b1 CHROMAT_FILE:
MSMg01no084_a08.b1 PHD_FILE: MSMg01no084_a08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:56 2005
         (372 letters)



>mm_chr13_58748657_58749430
          Length = 774

 Score =  629 bits (325), Expect = 0.0
 Identities = 355/367 (96%), Gaps = 6/367 (1%)
 Strand = Plus / Minus

                                                                       
Query: 10  gaattcaggggagatcacgcaaagtgtagtgtagaaaatgagcaaattttgctgcagaaa 69
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 451 gaattcaggggagat-acgcaaagtgtagtgtagaaaatgagcaaattttgctgcagaac 393

                                                                       
Query: 70  aaaagggggac----acgggagccttttatagctttttctctgatggtccccttaagcct 125
           |||| ||||||    | ||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 392 aaaa-ggggacatggaggggggccttttatagctttttctctgagggtccccttaagcct 334

                                                                       
Query: 126 ggactcccaattgcttgctcaactcattcattttacacatgaaaggagagatgacacagt 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 ggactcccaattgcttgctcaactcattcattttacacatgaaaggagagatgacacagt 274

                                                                       
Query: 186 ctggtgtctgcggtggctgaaggaaggggtacagatgcccctccttacactgtaaaatga 245
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 273 ctggtgtctgcggtggctgaagggaggggtacagatgcccctccttacactgtaaaatga 214

                                                                       
Query: 246 ctcctgggggccactacagaaaaccacaggcaggcaaagtgcacagttgtgtgcaaggca 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 ctcctgggggccactacagaaaaccacaggcaggcaaagtgcacagttgtgtgcaaggca 154

                                                                       
Query: 306 ttcgcaagggatgagtctaccacccgcctccagcacccatagctcagggctggaaagatc 365
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 153 ttcgcaagggatgagtctaccacctgcctccagcacccatagctcagggctggaaagatc 94

                  
Query: 366 ctaagag 372
           |||||||
Sbjct: 93  ctaagag 87


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 774
Length adjustment: 9
Effective length of query: 363
Effective length of database: 765
Effective search space:   277695
Effective search space used:   277695
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no084_a08.g1 MSMg01no084_a08.g1 CHROMAT_FILE:
MSMg01no084_a08.g1 PHD_FILE: MSMg01no084_a08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:56 2005
         (290 letters)



>mm_chr13_58597673_58598362
          Length = 690

 Score =  429 bits (222), Expect = e-125
 Identities = 264/290 (91%), Gaps = 20/290 (6%)
 Strand = Plus / Plus

                                                                       
Query: 1   cactcacaaatccacccactcaggcctcgttctctctcatagatctgcatgcctgacatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cactcacaaatccacccactcaggcctcgttctctctcatagatctgcatgcctgacatt 260

                                                                       
Query: 61  gtctagcgatgaattcccccctcccacatggagtcttcccaggacagcagcaccagaacg 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 261 gtctagcgatgaattcccccctcccacatggagtcttcccaggacagcagcaccggaacg 320

                                                                       
Query: 121 caatgtctttctctgaatttatatcctatggtgtgtacctgacttctaatctatgacgtg 180
           || |||||||||||||||||||||||||||||||||||  |                  |
Sbjct: 321 cagtgtctttctctgaatttatatcctatggtgtgtac--g------------------g 360

                                                                       
Query: 181 tgtccatgccttgctgtgacaatgagatgacaaagttcttgtgaacctgtcattgtcatc 240
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 361 tgtccatgccttgctgtgacaataagatgacaaagttcttgtgaacctgtcattgtcatc 420

                                                             
Query: 241 tctgctccctcagtatggagggtccactgatggggatttactgactgtgg 290
           ||||| ||||||||||||||| |||||||||||||||| |||||||||||
Sbjct: 421 tctgccccctcagtatggaggatccactgatggggattaactgactgtgg 470


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)