BAC Information

Click to search

BAC

Clone NameMSMg01-084F16
Chromosome13 (Build37)
Map Location 23,596,188 - 23,596,657
singlet/doubletsinglet
Overlap genenone
Upstream geneV1rh11, OTTMUSG00000000494, V1rh8, V1rh7, LOC382740, LOC432735, V1rh9, OTTMUSG00000000514, V1rh10, V1rh20, V1rh18, V1rh6, V1rh5, V1ri2, V1ri10, V1rh14, LOC100040639, V1ri5, V1rh13, V1rh12, V1rh16, OTTMUSG00000000541, Zfp322a, Abt1, Btn1a1, Btn2a2
Downstream geneHist1h4h, Hist1h2af, Hist1h3g, Hist1h2bh, Hist1h3f, Hist1h4f, Hist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d, Hist1h2be, Hist1h1e, Hist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe, Hist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a, Trim38, Slc17a2, Slc17a3, Slc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn, Lrrc16, LOC100042017, Cmah
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-084F16.T7 (MSMg01no084_f16.b1)MSMg01-084F16.TJ (MSMg01no084_f16.g1)
ACCAG304233AG304234
length731714
length of high quality
(start - end)
474 (34 - 507)341 (56 - 396)
definitionCHROMAT_FILE: MSMg01no084_f16.b1 PHD_FILE: MSMg01no084_f16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:22 2005CHROMAT_FILE: MSMg01no084_f16.g1 PHD_FILE: MSMg01no084_f16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGGCCGCTATACGACTCCTATATTCAGAGGATCCGCGGAATTCACCTTG
TGTACCCCACAGACCCACTCAAATAGATCTGAGACATCAATTAAAAAAGT
ATAAAAAGACATTCATGAACCGAGACCAGAAGTTTTATAATCTGGACGGT
CGATGGAGGAGCAATAGGACCTGTTAGGCCCAATAAGACTCGGCTTCAAG
CTAAGATGAAGGTGAAGGCAATCGGGCTGGTACCATCTGCCACTTCTGTT
CCCACCGTGTAGTTCCACACTCATAAGGTGTCCCCCACTTCGCTCGGCTG
AGGTGACCTGCGGTTGCTCTACTGTGCCCTACGGATTCCTCAGATTCATG
TGCCCAAACCTAGATCTTCCGAATGTCACTAGAAGATGATGTCTTTAAAG
AGGTGATCCCGCAAAAAGTGACTGTCATTCTTACATTCTTACAAGAAGAG
TGTGTTAGAACACTGGTCCACTAAAGAAGACCACATATAGAAGATCATTG
CCTGCAAGTCAAGGGAAAGAATCCTTAAGGAGAATGTGTGTGTGTGTGTA
TACATACACACATATATAGTATATATTCTGTATATACTGTGTGTATATCA
ATATACTTTATATATTGTATATATACATTCTATAATATATATTCAATCAC
TATAGTTTTTTAAAATTTGAAAACATACAACAAGAAATTCTTGTGTTTAA
ATTCAACACCCTGCAGTATTCTTCCTGGTAG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCTACGGAGGCTTACTTGGCAGGATCACTTGGAGCTGGTGTACTTG
GTGACGGCCTTGGTGCCCTCCGACACGGCGTGCTTGGCCAGCTCCCCGGG
CAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGACGTGATGGTCGAGC
GCTTGTTGTAATGCGCCAGGCGGGACGCCTCGCCCGCGATGCGCTCGAAG
ATGTCGTTCACGAACGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCC
CGTGTCGGGGTGCACTTGCTTCAGCACCTTGTACACGTACACCGAGTAGC
TCTCCTTGCGGCTGCGCTTGCGCTTCTTGCCATCCTTCTTCTGGGCCTTG
GTGACGGCCTTCTTGGAGCCCTTCTTCGGGGCGGGAGCGGACTTCGCAGG
CTCAGGCATCTTCGGATTCCCAAACACAGGAACCTCAGTGTGGGCTGGGA
ACGGACTTCTCCTACTTATAGGGCGTTTATGCTAATGAAGGATTTCGAAC
CAGTCTCAGCTAATTGGAAGAAGAAAAGTAGCGCGTTCATGGGCGGTATT
ATGCAAATGAAGTTTCCAGAAGCAGATTTTTCTATTGGCTATATCAATGA
ACTCACTTGGAACCTATCCAGTATTATCATTTACTACCCCGGAACCCACT
ATAAAAGTTGTCGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no084_f16.b1 MSMg01no084_f16.b1 CHROMAT_FILE:
MSMg01no084_f16.b1 PHD_FILE: MSMg01no084_f16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:22 2005
         (474 letters)



>mm_chr13_23595984_23596857
          Length = 874

 Score =  855 bits (442), Expect = 0.0
 Identities = 463/470 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   ggaattcaccttgtgtaccccacagacccactcaaatagatctgagacatcaattaaaaa 64
           ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggaattcaccttgtgcactccacagacccactcaaatagatctgagacatcaattaaaaa 264

                                                                       
Query: 65  agtataaaaagacattcatgaaccgagaccagaagttttataatctggacggtcgatgga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agtataaaaagacattcatgaaccgagaccagaagttttataatctggacggtcgatgga 324

                                                                       
Query: 125 ggagcaataggacctgttaggcccaataagactcggcttcaagctaagatgaaggtgaag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggagcaataggacctgttaggcccaataagactcggcttcaagctaagatgaaggtgaag 384

                                                                       
Query: 185 gcaatcgggctggtaccatctgccacttctgttcccaccgtgtagttccacactcataag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gcaatcgggctggtaccatctgccacttctgttcccaccgtgtagttccacactcataag 444

                                                                       
Query: 245 gtgtcccccacttcgctcggctgaggtgacctgcggttgctctactgtgccctacggatt 304
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 445 gtgtcccccacttcgctcggctgaggtgacctgcgggtgctctactgtgccctacggatt 504

                                                                       
Query: 305 cctcagattcatgtgcccaaacctagatcttccgaatgtcactagaagatgatgtcttta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cctcagattcatgtgcccaaacctagatcttccgaatgtcactagaagatgatgtcttta 564

                                                                       
Query: 365 aagaggtgatcccgcaaaaagtgactgtcattcttacattcttacaagaagagtgtgtta 424
           ||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aagaggtgataaggcaaaaagtgactgtcattcttacattcttacaagaagagtgtgtta 624

                                                             
Query: 425 gaacactggtccactaaagaagaccacatatagaagatcattgcctgcaa 474
           |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 625 gaacactggtccactaaagaagaccacatagagaagatcattgcctgcaa 674


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space:   400896
Effective search space used:   400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)