BAC Information

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BAC

Clone NameMSMg01-084F22
Chromosome13 (Build37)
Map Location 103,682,865 - 103,683,404
singlet/doubletsinglet
Overlap geneMast4
Upstream geneCd180
Downstream geneEG621312, EG432800, LOC432801, LOC100040045, Ppia-ps13_1282.1, Sfrs12, Erbb2ip
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-084F22.T7 (MSMg01no084_f22.b1)MSMg01-084F22.TJ (MSMg01no084_f22.g1)
ACCAG304245AG304246
length683716
length of high quality
(start - end)
343 (19 - 361)540 (55 - 594)
definitionCHROMAT_FILE: MSMg01no084_f22.b1 PHD_FILE: MSMg01no084_f22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:23 2005CHROMAT_FILE: MSMg01no084_f22.g1 PHD_FILE: MSMg01no084_f22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTGTTAAGCTCTCATCCCATTCTTAAATAGGGTTACTATGTTCTCTGGA
GTCTAACTTCTTCAGTTCTTTGTATATTTTGGATGTTAGCCCTCTATCAG
TTGGTAAAGATCTTTTCCCAATCTGTGAGTTGCCATTTTGTCTTATTGAC
ATTGTCCTTTGCCTTACAGAATCTTTGCAATTTTATGAGGTCCCATTTGT
CAATTCTTGATCTTAGAGCATAAGCCATTGGTGTTCTGTTCAGGAAAATT
TCCCCTGTGTCAATGTGTTCAAGGTTCTTTCCCACTTTCTCTTCTATTAG
ATTCATAGCATCTGGTCTTATGTGGAGGTCCTTGATTTACTTGGACTTGA
GCTTTGTACAAGGAGCTAACAATGGGTTAATTTGCATTTTTCTACATGCT
GACTGCCAGTTGAATCAGCACCATTTGTTGAAAATGCTGTCTTTTTGCCT
TTGCCAAAGATCAAGTGACCCAAGGTGTGTGGCTTCATATCTGGGTCTTG
AATTCTATTCCATTTATCTACCTGTGTGTCTCTATACCAATACCATGCTT
TTTTGTTCTTTGTTTTTATTTCTTTCATTACTATTGCTCTGTAGAATAGC
TTGAAGTCAGGGATGTTTATTCAACCAAAACTTCTTTTACTGTTCAGAAT
GCTATCTGCTATCCTGGATTTTCTGTTATTCCA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTTTGGAAGCGTCTTTTCTTTTTAAAATACAGTGATTTCATTTGATT
GTAGTAAGCCAATTTCTTAAGAGGGCCCTGGTTGACGCCACTCACTTAAA
TCCGTCTTTTCCTCTGAGAAATCACTAAGATCTAAAGACTGACTGCTCTG
AAATGTATAAAACAATGCTGTCGGAATAAACTATAAATAGTCTACAATGT
GCAGAAGACAAATACTGTGTCCAGGATTCTCTAAACCAACAGAAACCCTT
TACTGGCTGTCTCTCGGGTTCCTGTGGTATAACACTTGAGCCCTTTCTAA
GGAGTTGCTTCCCCTTTCTAAAGACCATAGAAGGTAACTTACTTTGGGAT
GCTCTTTAACTGATAAAGGTGTTTTCATGGTCAGTTCTGGTGACTTCACA
TAAGGGGCTAATGTAGAATTAACTTAATGTAGAGAAAGAAAGTCCAGACA
GCAAAGTGTGTTTCATTTTGCTCTGAAATCATGTTGGTAAATAGATACTT
TATAGATGGCCAAGTTTGCTCTTTACATATGGTGTTACCCTAAGCTTTAA
CAATTAACTGACATGTCCCTAATTCCAAAAGGAATATATAGAATGTTTCT
GTTACCTCTAGTTTTAAATATTTCAATAGTGTGAGCATGTTATTATAAAA
TTAAAATGAGATTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no084_f22.g1 MSMg01no084_f22.g1 CHROMAT_FILE:
MSMg01no084_f22.g1 PHD_FILE: MSMg01no084_f22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:23 2005
         (540 letters)



>mm_chr13_103682665_103683604
          Length = 940

 Score =  969 bits (501), Expect = 0.0
 Identities = 531/541 (98%), Gaps = 2/541 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttggaagcgtcttttcttttt-aaaatacagtgatttcatttgattgtagtaagccaat 59
           ||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||| |
Sbjct: 740 tttggaagcttcttttctttttaaaaatacagtgatttcatttgattgtaataagccagt 681

                                                                       
Query: 60  ttcttaagagggccctggttgacgccactcacttaaatccgtcttttcctctgagaaatc 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ttcttaagagggccctggttgacgccactcacttaaatccgtcttttcctctgagaaatc 621

                                                                       
Query: 120 actaagatctaaagactgactgctctgaaatgtataaaacaatgctgtcggaataaacta 179
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 actaagatct-aagactgactgctctgaaatgtataaaacaatgctgtcggaataaacta 562

                                                                       
Query: 180 taaatagtctacaatgtgcagaagacaaatactgtgtccaggattctctaaaccaacaga 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taaatagtctacaatgtgcagaagacaaatactgtgtccaggattctctaaaccaacaga 502

                                                                       
Query: 240 aaccctttactggctgtctctcgggttcctgtggtataacacttgagccctttctaagga 299
           |||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 501 aaccctttactggctgcctctcgggttcctgtggtgtaacatttgagccctttctaagga 442

                                                                       
Query: 300 gttgcttcccctttctaaagaccatagaaggtaacttactttgggatgctctttaactga 359
           ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 441 gttgcttcccctttctaaagaccgtagaaggtaacttactttgggatgctttttaactga 382

                                                                       
Query: 360 taaaggtgttttcatggtcagttctggtgacttcacataaggggctaatgtagaattaac 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taaaggtgttttcatggtcagttctggtgacttcacataaggggctaatgtagaattaac 322

                                                                       
Query: 420 ttaatgtagagaaagaaagtccagacagcaaagtgtgtttcattttgctctgaaatcatg 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttaatgtagagaaagaaagtccagacagcaaagtgtgtttcattttgctctgaaatcatg 262

                                                                       
Query: 480 ttggtaaatagatactttatagatggccaagtttgctctttacatatggtgttaccctaa 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttggtaaatagatactttatagatggccaagtttgctctttacatatggtgttaccctaa 202

            
Query: 540 g 540
           |
Sbjct: 201 g 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space:   492900
Effective search space used:   492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)