BAC Information

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BAC

Clone NameMSMg01-084J12
Chromosome13 (Build37)
Map Location 37,758,414 - 37,758,662
singlet/doubletsinglet
Overlap geneLOC100042802
Upstream geneNrn1, F13a1, Ly86, LOC100042794, LOC100042800
Downstream geneLOC100041624, Rreb1, Ssr1, Cage1, Riok1, Dsp, 6530403A03Rik, Bmp6, Txndc5, Muted, Eef1e1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-084J12.T7 (MSMg01no084_j12.b1)MSMg01-084J12.TJ (MSMg01no084_j12.g1)
ACCAG304402AG304403
length701784
length of high quality
(start - end)
276 (20 - 295)249 (130 - 378)
definitionCHROMAT_FILE: MSMg01no084_j12.b1 PHD_FILE: MSMg01no084_j12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:39 2005CHROMAT_FILE: MSMg01no084_j12.g1 PHD_FILE: MSMg01no084_j12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTACCTATTTCTAGAGATCCGCGGAATTCTTTGTTTATCTCTGAGCCCCA
CTTTTTAATGGGGTTATTTGATTTTCTGGAGTCCACCGTCTTGAGTTCTT
TATATATATTGGATATTAGTCACCCATCTGATTTAGGATAGGTAAAGATC
CTTTCCCAATCTGTTGGTGGCCTTTTTGTCTTATTGACAGTGTCTTTTGC
CTTACAGAAGCTTTGCATCTCCCATGCTCATGGATTGGCAGGATCAACAT
TGTATAAATATCTATCTTGCCAAAAGCAATCTACAGATTCAATGTATTCC
CCATCAAAATTCCAACTCAATTCTTCAACAAATTATAAAGGGCAATCTGC
AAATTCATCTGGAATAACATAAAACCTAGGATAGCAAACACTCCTCTCAA
GGATAAAAGAATCTCTGGTGGAATCACCATGCCTGACCTAAAGCTTTACT
ACAGAGCAATTGTGATAAAAACTGCATGGTACTGGTATAGCGACAGACAA
GTAGACCAACGCAATAGAATTGAAGACCCACAAATGAATTCCCACACCTA
TGGTCACTTGATCTTTGACTTGGGAGCTAAAACCATCCATCCCACATAAT
AAAAGACTGCATTTTCAACAACCGGCGCTGGCCCAACTGGTGGTTACCAT
GTTCAACAATGCTAATTGATCCAGTCCTATCTCCTTGCATTAATGTCAAA
G
NTTTTTTTNTNTTTTTNNTNNNTTTTTTTTTTTTTTNTTNNNNTGTTATC
NNNCCCCGATGATGTGAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGTGGGTCAGAGACAAGTTG
GTGTAAGTGCTGGCACGGCGCGGCTCACCTGTTGTGTGATTAAGTCATGA
GCTGCCGGTTGTTGTCTTTGGGACGAGGCCAGGAAGCATTTGTTCAAGGG
AAGAACGAGGCTCTGTGTGCTGTGTGACTGTATCAATAGTCACGGGCAAA
CAGATTCCCGCAGAAGGGTAGAATGGGAAGTGGGCGGTGCAGACAAAGCA
GCTGTGTGGAAAGGTATCTCCGTCAAGAATGTGTTGGCGGCGAGGAACAA
AAACTCCCTTAGCCGGAGTAGAAATGGGATCTGTTGATGGTGTCGGGGAA
CTCAGGAAACATGGAAGGAAGGCCACGCTGACGTCATGGGAACTGGAGGC
CTCTCTAGGAGCTCCTCACTCCCTGACCTGTTCTCTCACCTCTTGGGTAG
GTCAACCTCATTCCTCTTTCTTGATAGGAGGCTTCTTTTCAAGGCCTCTC
TCTCTTATGACTTGGGCCTGTATGAGGATTGCGTTTGCCATGGTGTCCAT
TGATTCTTCTCTCTTCTCACAGTTCTTATGCTATCCCCCCGCTAGATTCC
TAGTGTTCGCCCGTGATGGACCCGAATATTCCTTGTACGGTCTGTATTAT
TTCTTTATTTAGGCCCTTCAATTTTCTTCTAGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no084_j12.g1 MSMg01no084_j12.g1 CHROMAT_FILE:
MSMg01no084_j12.g1 PHD_FILE: MSMg01no084_j12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:40 2005
         (249 letters)



>mm_chr13_37758214_37758862
          Length = 649

 Score =  458 bits (237), Expect = e-133
 Identities = 246/249 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagtgggtcagagacaagttggtgtaagtgctggcacggcgcggctcacctgttgtgtga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 cagtgggtcagagacaagttggtgtaagtgctggcacggcgcggctcacctgttgtgtga 390

                                                                       
Query: 61  ttaagtcatgagctgccggttgttgtctttgggacgaggccaggaagcatttgttcaagg 120
           ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct: 389 ttaagtcatgagctgccggttgttgtctttgggacaaggccaggcagcatttgttcaagg 330

                                                                       
Query: 121 gaagaacgaggctctgtgtgctgtgtgactgtatcaatagtcacgggcaaacagattccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 gaagaacgaggctctgtgtgctgtgtgactgtatcaatagtcacgggcaaacagattccc 270

                                                                       
Query: 181 gcagaagggtagaatgggaagtgggcggtgcagacaaagcagctgtgtggaaaggtatct 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 269 gcagaagggtagaatgggaagtgggcggtgcagacaaagcagctgtgtggaaagatatct 210

                    
Query: 241 ccgtcaaga 249
           |||||||||
Sbjct: 209 ccgtcaaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)