BAC Information

Click to search

BAC

Clone NameMSMg01-084M02
Chromosome13 (Build37)
Map Location 66,980,863 - 66,981,520
singlet/doubletsinglet
Overlap genenone
Upstream geneVmn2r-ps99, LOC628794, EG665897, LOC100041855, EG628746, LOC100042434, LOC100041892, EG665974, LOC100041915, 2410141K09Rik, C330014B19Rik, Mzf6d, Vmn2r-ps106, LOC666027, LOC100042492, LOC100041947, EG382769, LOC666052, EG432768, LOC666061
Downstream geneUqcrb, Mterfd1, Ptdss1, Zfp712, Zfp708, Zfp759, Rsl1, LOC674699, Zfp455, Zfp458, Zfp457, A230042K10Rik, E130120F12Rik, Zfp456, 2810487A22Rik, Zfp459, C330011K17Rik, LOC666098, 9630025I21Rik, Zfp817, Zfp87, Zfp748, A530054K11Rik, LOC328277, 3830402I07Rik, EG666137, Zfp85-rs1, LOC674597, Zfp273, BC048507
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-084M02.T7 (MSMg01no084_m02.b1)MSMg01-084M02.TJ (MSMg01no084_m02.g1)
ACCAG304520AG304521
length6951,465
length of high quality
(start - end)		647 (45 - 691)---
definitionCHROMAT_FILE: MSMg01no084_m02.b1 PHD_FILE: MSMg01no084_m02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:52 2005CHROMAT_FILE: MSMg01no084_m02.g1 PHD_FILE: MSMg01no084_m02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:52 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTTTGCCTCCTGGATGTCTCACCTTCTATTCTAGCCTTTCCTAAA
TGCCATAGATTTTTTTTTTAATTGAAAGGTGATGCATCCATCAAATATAC
AAGATATTCTCTCTACAGTCACTAGCATCCTTAAAACCTTCAGCTTGAAA
CTGTCAATTATACTAATTCTACTTTTACTTCTAAGGCACCAACACCCCCA
GCAGCATCCCAAGGCCATCCATAGGTGTACTACGGCTTTAAAGAACTCAT
TTGCACCTGCTTTTCCTTTCAGGATTTTATTCCAGTAATAGTGCCACTCC
AGCTGGGTATTAGCACTAGGATGAGAAGGTGACTTGTAAGAGTCACTGTT
TTTCCTGTAAGAAAAAAAAATTGTCTCTAAGTATAAAAGGATGTTAAGGT
CATGTAATGGAATTTTTTCATGAAATTTTAATTATATAACACTTGATCTT
TAATCACTTACACATTAAATCTTAAATATGCTAATATACTCATCACCATA
TAACATTACCTAACTTTGTTTTATTTTTTGTTTTGCTTTGTTTTGTTTTT
AAGACAGAGTCTTCTGGAATTCTCTATGTAGACCAGGCTGGTCAGGAACT
CACAGAGACTCATCTGCTAGGATTAAAATCATGCTGCCACCAAGC

GGGTGCGGGTGGTGGCAGGGCTTTGGGGCGGGTTCGGGCCGGGGCCGCGT
GCGTAATCTTGTAGGGCTGCACATCCACTTTTCACAGGCTTTTTTGTTGC
GCACACTTCTCTTTTGTCTTTCCTAGCCGCTTCTCTGCCTTCGTTCGCCG
CCTGTGTATTTCGTTTTCCTCGGTCCCCGCGCGTGCGGGGGTAGGGCCTC
TATATTATCTTTCCGCGCGCTGTTCGTCACAGTGACGGATTAAAAATAAT
AAACACGTTAAGCACCGTCTCTTTCGAACCACCTCGCTTCGAGTAATGTT
TGCGAATTATATACATATTTACCATTTTACAACGTACACACAACACAGAA
ACATCACTTTGTCTGAAACAATCGACGCTCTCACCATTTGTTATAACACG
CTGCTCTAAATTACGACTGTATTAGTGTTCTGAGGGACAGGACCACATAG
AGCACGTTGCGCTAGTTTGGTATATCTCTAACCAGCTCCACACGAATAAC
ACTGGGACAATATTTCCCCGCGAACATATATAATATGCGGCTCNAGTAGA
AGATAGAAGTGAGCGCAACGATGCACATACCGCAGAGACGATTATTGTTT
GTAACACCCCAGATGGTGTTTTTACTTCCACATAGACATATCAACTACAA
TTGTGCGAACGCTACACATTAGTTTTGATACCAATCTATTCATCTCACTG
TGCCTCGGTGATGTTGGTACTAAGGAATGTTATTGGTCGNACACGCTTGG
CGTGGTGTGACCAGGCGACTATGTCGTTGATCGTATTTGCGTGGCGCAAC
ATAATCTGGTATCGGCACACGCCACTATAATTCGTTGACGGATATATGTA
CACCTCTACAACACGCGATGTATCGCTTGTTGTCATGTAAGCACTGCTAA
GTATTATTCGCGGCGTGTGTAGTATCCTATTCGCGCGGCTTATCATATAT
TACAACAAATAGCGCGGTGCGACATATATGTTACTTCGCGCGCGCTATTA
TTGTGTCCGCCGCACAATTGTGATATCTAGCTGCGTCGCGTTATGAGTGC
GGTGCACGCGCAGCGCGCANATAAATGAGATATTCAACACGGCGCCCGGC
GATATACCTCATTTNTTAAANGATCGGAGATAAATACATATCTCTATAGT
GGACGTGCGACAATTCTTATAATTATATATGGTGACAGCAAAGCACTCTG
CATGGCGGCGGATTATATAATATATATCCACTAATCACTCACACAACACA
GCGTTATTGCGTGCGCACGCGGCGGTATATATATACATTTTGCACCAGCA
TCTGATACTCATGTGTGTCTCACACACACTTTGGTGATGCTGTATGTATA
ACCTCACTCTTACTTTCGTTCCAGCACACGTCGCGCCTCCCTCCATGTAA
TATTATATGTGTTTGTATACAGCGGCTGAGATCGTAGACTATANCTATGC
AGACTGCTAAGTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no084_m02.b1 MSMg01no084_m02.b1 CHROMAT_FILE:
MSMg01no084_m02.b1 PHD_FILE: MSMg01no084_m02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:52 2005
         (647 letters)



>mm_chr13_66980860_66981906
          Length = 1047

 Score =  872 bits (451), Expect = 0.0
 Identities = 596/661 (90%), Gaps = 34/661 (5%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttttgcctcctggatgtctcaccttctattcta--gcctttcctaaatgccat 62
           ||||||||||||||||||||| ||| ||||||||||||||  || |||| |||| |||||
Sbjct: 661 gaattctttttgcctcctggaggtcccaccttctattctatggcgtttcttaaacgccat 602

                                                                       
Query: 63  aga-ttttttttttaattgaaaggtgatgcatccatcaaatatacaagatattctctcta 121
           ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 601 agatttttttttttaattgaaaggtgatgcatctatcaaatatacaagatattctctcta 542

                                                                       
Query: 122 cagtcactagcatccttaaaaccttcagcttgaaactgtcaattatactaattctacttt 181
           ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct: 541 cagtcactagcatccttaaaaccttcaacttgaaactgtcaattattctaattctacttt 482

                                                                       
Query: 182 tacttctaaggcaccaacacccccagcagcatcccaaggccatccataggtgtactacgg 241
           ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 481 tacttctaaagcaccaacacccccagcagcatcccaaggccatccatagctgtactacgg 422

                                                                       
Query: 242 ctttaaagaactcatttgcacctgcttttcctttcaggattttattccagtaatagtgcc 301
           ||||||||||||||| || ||||| |||||||||||||||||||||||||||||| ||||
Sbjct: 421 ctttaaagaactcatgtgtacctgtttttcctttcaggattttattccagtaatactgcc 362

                                                                       
Query: 302 actccagctgggtattagcactaggatgagaaggtgac-------------------ttg 342
           ||||||||||||| ||| ||||||||||| ||||||||                   |||
Sbjct: 361 actccagctgggtgttaacactaggatgaaaaggtgaccttcctatgccaaggttacttg 302

                                                                       
Query: 343 taagagtcactgtttttcctgtaagaaaaaaa----aattgtctctaagtataaaaggat 398
           |||||| | |||||||||||||||||||||||    ||||||||||||||| ||||||||
Sbjct: 301 taagagcctctgtttttcctgtaagaaaaaaatttaaattgtctctaagtacaaaaggat 242

                                                                       
Query: 399 gttaaggtcatgtaatgga-attttttcatgaaattttaattatataacacttgatcttt 457
           |||||| ||||||| |||| |||||||||||||||||||||| |||||||||||||||||
Sbjct: 241 gttaagatcatgtattggacattttttcatgaaattttaattgtataacacttgatcttt 182

                                                                       
Query: 458 aatcacttacacattaaatcttaaatatgctaatatactcatcaccatataacattacct 517
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct: 181 aatcacttacacattaaatcttaaataagctaatatactcatcaccatataacatcacct 122

                                                                       
Query: 518 aactttgttttatttt---ttgttttgctttgttttgtttttaagacagagtcttctgga 574
           ||||||||||| ||||   |||||||| |||||||||||||||||||||  |||||||||
Sbjct: 121 aactttgttttgttttgttttgttttgttttgttttgtttttaagacag--tcttctgga 64

                                                                       
Query: 575 attctctatgtagaccaggctggtcaggaactcacagagact-catctgctaggattaaa 633
           ||||| ||||||||||||||| | |||||||||||||||| | || ||||||||||||||
Sbjct: 63  attctttatgtagaccaggctagccaggaactcacagaga-tacacctgctaggattaaa 5

            
Query: 634 a 634
           |
Sbjct: 4   a 4


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space:   660569
Effective search space used:   660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |