BAC Information

Click to search

BAC

Clone NameMSMg01-084M06
Chromosome13 (Build37)
Map Location 57,655,275 - 57,776,428
singlet/doubletdoublet
Overlap geneSpock1
Upstream geneTgfbi, Smad5, EG627415, Trpc7, LOC100040995
Downstream geneKlhl3, Hnrpa0, 5133401N09Rik, Ubqln1, LOC671252, Gkap1, Kif27, Hnrpk, Rmi1, LOC100041086, Slc28a3, LOC100041510
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-084M06.T7 (MSMg01no084_m06.b1)MSMg01-084M06.TJ (MSMg01no084_m06.g1)
ACCAG304528AG304529
length730726
length of high quality
(start - end)
280 (42 - 321)295 (72 - 366)
definitionCHROMAT_FILE: MSMg01no084_m06.b1 PHD_FILE: MSMg01no084_m06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:53 2005CHROMAT_FILE: MSMg01no084_m06.g1 PHD_FILE: MSMg01no084_m06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:53 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,776,153 - 57,776,428)(57,655,275 - 57,655,569)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTCTGTGTCACGGGGCGGGGTGGGGGATGGGCTTCTTGCTATGAGGATGG
GAGAGGTGTCCTGTGGCTAATTGTTCAAGTAGATCACGGAAACAGGAGAA
GTCACTCTTCAACTGAGTAATAGGTGTTAATAGTTACAAGTGCTAATAAT
GTTGCTAAGAGGAGTAGGACATTAGTTAAACATTGATTAGGCGTCTTTAT
CCTTTGGCTTCTGTGAGGCTTTAATATGCTAATTCTGTTGTAGTTCTTCA
AAGGAAGGCAGCATACATGTGATCTTTTAGGCATCTGAGCCTAGGCCTCA
TTCCTAAGGAACATCTCCAGGCAGGAGTCTCCTTAGCTGTTTTTTTAAAG
ATGTCTCCTGTGATACCGCTCATGATTGTCTAATTCTGCTGCTCTCCGAT
GATTTACCGCTAGGCTTTTTGTGAGAAAAGGACTAATGGTTGTGACTGGT
TATTCCAGAGTCCTATTATGGACTGCCTTTTCGTGTTCTGCCTCCCTTTT
GTCCTTCTTTTTGCCCCCGCCTTTTCCTGCCCCTATTTTTTTCCTCTCTT
TGTTTTTTTTCCCCCCTTTTTTTATCACCCCACTTTTTTAACATTCTTTC
CCTTGACGGTATACATTCTTTCTATTTATTGTCTCCTCACCCTTTTTTTT
TTCTCACCATCTTTTTTTTTCTCTTCTCTT
TACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCAAGTGCTACTGGACATGACCTTATAAGG
ATAAAGGGAGTTTAACCTGGCTACTGGCTATGGCTAAGTGACCTCCCCTT
GTGAGGCAAGAGTGGGGCCACAGGCTACTTGCATCAGGACAAGCAGGCCC
TAGGTGGAGGGAGGGGAAGATGGTCCTACTCCTGCCGATCTCAGAATGAG
ATTTCCAGGGTTTGGACAAGCCTCAACCCTACTCTTGCTCCAGGCCTGCT
CTTCCGGGTTCCACAGCTTCCTGGTCCCATGACTCTGCTTCCTTGTTTTA
ATGTCACTGAAGTGGGCAGAACAGACACCTAGGCAGAAGACCATGATCAT
CATGACTCGTCATAACCCATGTCCCAAGGAACCTTACTATAGCTTGGATC
TGGAATACACACCCACAGCCTAAGTGTCATAGGTTTGACCTTTGTCCACA
TTTTACCCCTGTTTACCGTATGACCTTCATTATGTACACCCCCTAGCTTA
ATAGGTTAGATCCTTGAGAATATGTCTTCAATGGGGGATCATTGGTTTCT
CGGTGCCCCCTTCGATTTCCTTTCTTTTCCTTCCCCGTGTCTTTCCCATA
AGTGTGTATAAGGAACTTTTTTCAACCCCCCTGGTCAATGTTACTTCCCC
AGGCTTAGAACTTGTTGCCCCACCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no084_m06.b1 MSMg01no084_m06.b1 CHROMAT_FILE:
MSMg01no084_m06.b1 PHD_FILE: MSMg01no084_m06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:53 2005
         (280 letters)



>mm_chr13_57775949_57776628
          Length = 680

 Score =  495 bits (256), Expect = e-144
 Identities = 271/276 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctgtgtcacggggcggggtgggggatgggcttcttgctatgaggatgggagag 64
           |||||||||||| || |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 480 gaattctctgtggcagggggcggggtgggggatgagcttcttgctatgaggatgggagag 421

                                                                       
Query: 65  gtgtcctgtggctaattgttcaagtagatcacggaaacaggagaagtcactcttcaactg 124
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 420 gtgtcctgtggctaattgttcaagtagatcacggaaaccggagaagtcactcttcaactg 361

                                                                       
Query: 125 agtaataggtgttaatagttacaagtgctaataatgttgctaagaggagtaggacattag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 agtaataggtgttaatagttacaagtgctaataatgttgctaagaggagtaggacattag 301

                                                                       
Query: 185 ttaaacattgattaggcgtctttatcctttggcttctgtgaggctttaatatgctaattc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 ttaaacattgattaggcgtctttatcctttggcttctgtgaggctttaatatgctaattc 241

                                               
Query: 245 tgttgtagttcttcaaaggaaggcagcatacatgtg 280
           |||||||||||||||||||||||| |||||||||||
Sbjct: 240 tgttgtagttcttcaaaggaaggcggcatacatgtg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space:   181841
Effective search space used:   181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no084_m06.g1 MSMg01no084_m06.g1 CHROMAT_FILE:
MSMg01no084_m06.g1 PHD_FILE: MSMg01no084_m06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:53 2005
         (295 letters)



>mm_chr13_57655075_57655769
          Length = 695

 Score =  478 bits (247), Expect = e-139
 Identities = 283/295 (95%)
 Strand = Plus / Plus

                                                                       
Query: 1   caagtgctactggacatgaccttataaggataaagggagtttaacctggctactggctat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caagtgctactggacatgaccttataaggataaagggagtttaacctggctactggctat 260

                                                                       
Query: 61  ggctaagtgacctccccttgtgaggcaagagtggggccacaggctacttgcatcaggaca 120
           |||||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||
Sbjct: 261 ggctaagtgacctccccttgtggggcaagggtggggccacaggctacttgcatcacgaca 320

                                                                       
Query: 121 agcaggccctaggtggagggaggggaagatggtcctactcctgccgatctcagaatgaga 180
           ||||||||| |||||| ||||||||  |||||||||||||||||||||||||||||||||
Sbjct: 321 agcaggcccaaggtggggggagggggggatggtcctactcctgccgatctcagaatgaga 380

                                                                       
Query: 181 tttccagggtttggacaagcctcaaccctactcttgctccaggcctgctcttccgggttc 240
           ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 381 tttccagggtttggacaagcctcaaccctactcctgctccaggcctgctcttcccggttc 440

                                                                  
Query: 241 cacagcttcctggtcccatgactctgcttccttgttttaatgtcactgaagtggg 295
           ||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 441 cacggcttcctggtcccacgactcggcttccttgttttaatgtcactgaagtggg 495


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 695
Length adjustment: 9
Effective length of query: 286
Effective length of database: 686
Effective search space:   196196
Effective search space used:   196196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)