Query= MSMg01no084_m23.b1 MSMg01no084_m23.b1 CHROMAT_FILE:
MSMg01no084_m23.b1 PHD_FILE: MSMg01no084_m23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:56 2005
(457 letters)
>mm_chr13_24035230_24036089
Length = 860
Score = 818 bits (423), Expect = 0.0
Identities = 447/455 (98%), Gaps = 3/455 (0%)
Strand = Plus / Plus
Query: 6 gaattcataacagccttggttgttctgcaccctgac-aagattcctggaaag-aagtcta 63
||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct: 206 gaattcataacagtcttggttgttctgcaccctgaccaagattcctggaaagcaagtcta 265
Query: 64 gcccttggtctctcgtcatctcttctgaaa-tacaccagtctgtccctctgaaggacaac 122
||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 266 gccctaggtctctcgtcatctcttctgaaaatacaccagtctgtccctctgaaggacaac 325
Query: 123 gttcgttttctttcagaaacaccaaacttaactttcaaatcaagttgttgggcaggtcac 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gttcgttttctttcagaaacaccaaacttaactttcaaatcaagttgttgggcaggtcac 385
Query: 183 gggtatatttgatggtgaaccacaaggccctccatctgacacgacttccctctcagatgc 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gggtatatttgatggtgaaccacaaggccctccatctgacacgacttccctctcagatgc 445
Query: 243 ttataacccctcctgtgttcacccatacacatttgcactggaaactcagcattctctgtg 302
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 446 ttataacccctcctgtgttcacccatacagatttgcactggaaactcagcattctctgtg 505
Query: 303 ccttggagcaagcatttcacacaactcttgctaatactttatgtccctgactgtgaggca 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 ccttggagcaagcatttcacacaactcttgctaatactttatgtccctgactgtgaggca 565
Query: 363 ggatagaaaggccagggaaatgtggggaacatggaaaggaagagtggcccctcagtcagg 422
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 ggatagaaaggccaggaaaatgtggggaacatggaaaggaagagtggcccctcagtcagg 625
Query: 423 catctgcttgaagcccattacaatgaatgcagcga 457
|||||||||||||||||||| ||||||||||||||
Sbjct: 626 catctgcttgaagcccattagaatgaatgcagcga 660
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 860
Length adjustment: 10
Effective length of query: 447
Effective length of database: 850
Effective search space: 379950
Effective search space used: 379950
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no084_m23.g1 MSMg01no084_m23.g1 CHROMAT_FILE:
MSMg01no084_m23.g1 PHD_FILE: MSMg01no084_m23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:56 2005
(488 letters)
>mm_chr13_24098235_24099122
Length = 888
Score = 920 bits (476), Expect = 0.0
Identities = 485/488 (99%)
Strand = Plus / Minus
Query: 1 aggatccttctacctctgcttgctaactgccaggattacaggcatgtttcaccaattcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 aggatccttctacctctgcttgctaactgccaggattacaggcatgtttcaccaattcca 691
Query: 61 gcaaacactttaaagttttcctaatatcttcattcctcaaatgctaaatgagtggaaaca 120
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 690 gcaaacactttaaagttttcctaatatcttcattcctcaaatgctgaatgagtggaaaca 631
Query: 121 gaaggttgactgtctatgctacaaaccatgttatttgtatcttggacagtgtaaatcaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 gaaggttgactgtctatgctacaaaccatgttatttgtatcttggacagtgtaaatcaca 571
Query: 181 gctaagattgtaatcagcacaggtattacaaacattattacagtcatccctatttcacaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 gctaagattgtaatcagcacaggtattacaaacattattacagtcatccctatttcacaa 511
Query: 241 ttacagtacttagagactacactctgctatactgttaatgaatcagtaaagaattgcatc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 ttacagtacttagagactacactctgctatactgttaatgaatcagtaaagaattgcatc 451
Query: 301 catttctgaattagtatgtgtctgtgtttgtatttgtgtttgtgtatgtataatgtgcac 360
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 450 catttctgaattagtatgtgtatgtgtttgtatttgtgtttgtgtatgtataatgtgcac 391
Query: 361 attgtatgctattgataaactgtactataggccccagctttaaaacattttaaattacat 420
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 390 attgtatgctattgataaactgtactctaggccccagctttaaaacattttaaattacat 331
Query: 421 ttcagcatagctgattgtctctgtaagactcctctattttattcatgttgaatcttaatt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 ttcagcatagctgattgtctctgtaagactcctctattttattcatgttgaatcttaatt 271
Query: 481 ctaagcag 488
||||||||
Sbjct: 270 ctaagcag 263
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space: 419684
Effective search space used: 419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
