Query= MSMg01no085_k10.b1 MSMg01no085_k10.b1 CHROMAT_FILE:
MSMg01no085_k10.b1 PHD_FILE: MSMg01no085_k10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:36:42 2005
(245 letters)
>mm_chr13_49633553_49634196
Length = 644
Score = 410 bits (212), Expect = e-119
Identities = 237/248 (95%), Gaps = 7/248 (2%)
Strand = Plus / Minus
Query: 1 cagtacacactgaagcaagagcatgcctt---taatatgccccgaccctgcacagaccca 57
||||||||||||||||||||||||| | ||||||||| |||||||||||||||||
Sbjct: 444 cagtacacactgaagcaagagcatg---tgagtaatatgccttgaccctgcacagaccca 388
Query: 58 aacatgcattctacacaaactacagtatgtagtagactttctcttatctgaaagcatttt 117
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 387 aacatgcattctacacaaactacagtatgtagtagactttcttttatctgaaagcatttt 328
Query: 118 ggagtgcaggacataaatattagcttccagtattgtatatgtcaaatttttattaggtat 177
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 327 ggagtgcaggacataaatattagcttccagtattgtatatgtaaaatttttattaggtat 268
Query: 178 tacattcttcaaatagtatatgttgatcatagtcatccctgcctggttccgttgggttag 237
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tacatt-ttcaaatagtatatgttgatcatagtcatccctgcctggttccgttgggttag 209
Query: 238 gttcaact 245
||||||||
Sbjct: 208 gttcaact 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 644
Length adjustment: 9
Effective length of query: 236
Effective length of database: 635
Effective search space: 149860
Effective search space used: 149860
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no085_k10.g1 MSMg01no085_k10.g1 CHROMAT_FILE:
MSMg01no085_k10.g1 PHD_FILE: MSMg01no085_k10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:36:42 2005
(224 letters)
>mm_chr13_49533477_49534102
Length = 626
Score = 387 bits (200), Expect = e-112
Identities = 219/226 (96%), Gaps = 2/226 (0%)
Strand = Plus / Plus
Query: 1 ctgaggatgatttacagctaggagtttaaccttgtactacccccc--tcctgtccttggc 58
||||||||||||||||||||||||||||| | |||||||| ||| |||||||||||||
Sbjct: 201 ctgaggatgatttacagctaggagtttaagcatgtactacacccagttcctgtccttggc 260
Query: 59 tttgacagtcctggtgtgggtatgttggaatttatcttaacagttatggcttatctcctg 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttgacagtcctggtgtgggtatgttggaatttatcttaacagttatggcttatctcctg 320
Query: 119 tttactcaacagagctactgacctttctagttactcttcatttgagttacgtttttcaag 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttactcaacagagctactgacctttctagttactcttcatttgagttacgtttttcaag 380
Query: 179 tacatacttatttagttattaactatatattaaatgatgttggggt 224
|||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 tacatacttatttagttattaaatatatattaaatgatgttggggt 426
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 224
Length of database: 626
Length adjustment: 9
Effective length of query: 215
Effective length of database: 617
Effective search space: 132655
Effective search space used: 132655
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
