BAC Information

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BAC

Clone NameMSMg01-087D19
Chromosome13 (Build37)
Map Location 4,861,467 - 4,861,785
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039279, Net1, Tubal3, Ucn3, Akr1c14, Akr1c18, LOC100039262, Akr1c13, Akr1c19, Akr1c12, Akr1c6, Akr1c20, Akr1c21, Akr1e1, EG432721, EG432723
Downstream gene1700016G22Rik, Klf6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-087D19.T7 (MSMg01no087_d19.b1)MSMg01-087D19.TJ (MSMg01no087_d19.g1)
ACCAG306326AG306327
length715711
length of high quality
(start - end)
323 (41 - 363)283 (71 - 353)
definitionCHROMAT_FILE: MSMg01no087_d19.b1 PHD_FILE: MSMg01no087_d19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:16 2005CHROMAT_FILE: MSMg01no087_d19.g1 PHD_FILE: MSMg01no087_d19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ATGACTATCCTTTGAAAGTATGAGCCCATGTACTAATAATCATGTTATCT
TGGGCAATCTACATCAAAGTATCTTCTCAAGCTCCCCCAAACAAATCAGA
AGTGTCTACAGTTCTGAATAAACAATGAACCAGTGAGAAAAACTGGGCCT
TAATCATCACTGATGCTCTTGCATGCATCTCCATTGCTATAGGGGAGAGG
TGAGAAAAAGGTGTGCCTGCTCAGACAGATTAACTACTGGAGTGTCAACC
ATTGATATCACAAGCACTATATCTCCTCGACCGAACTTTATATGCTTTGT
ATCATAATGCAAATAACACCCTCCAAGAACAGGTCTTTTATTCAGAAAAA
AATATATAATAGTTCAACCTAAGGAGAAAATTTTCAAACTTTCATTCAGT
AATAAGGCATGAAGCATTGCAGTCGCTTAGAGAGATTTATGTACAGTTTT
AGTATTACTGCTGCTCGCAGCCTACTGGTGTTCTCTGATTCATGAGGCAA
TTGTAAATGCAACAAAAAGAGTCTCTGTTGTTTCTAGTCACAGCATATGC
TATTATAGCTAACAATTAGGTAGTAGAATCAACTGTCATAATAAAAAGAA
ATAGCTATTATTAGCTCCCCAAATGCCTTTGTGTGTTCTTTCCATCACAT
ACTAATAGCTGAGAA
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTGGCTGCCTGAAGTTCTTTCTATAGAGTT
GAGGTTACCTAGTCTTTCCCCATGTACATTTTTGTTGTCCTTGTTCAGCA
CATGTTTAGACAGTGATGTTAGTGACATTTTCTGGATATAGTTTCTAACT
TTACTAGGGGATACAATCTCACCGAAAACATTCTGGCCTTTTTGCTCTTT
CAATCTTTCTAACCCTTCTGCAATGTTTTCAGAGCCTTAGGTGAGAGTGT
TTTTTATAGATGTATCTGTGGGGACTGTGTTCAACAACTCTATGTTTGAT
TGGCTGTAGTTTTTCCACACCCGTGTTTGTTTCAAAGATCAATTTTTCTC
ATGAATAATGAGGACTACATTTATGGGTCTAAAGGCAGATAATTAGAATG
TACACAGGAATTATGTTGGCTTACTAAAGTGGCAACTGTAGGCTCTTCTT
TGAGATCTATGACCTCAGAATACCTGGTTAGCTGGTAGGTTTCCAGTGTC
ACGCATGAATTCCCTCTTATTGCACTGACTCTCACTTTCTGGATTGAGTT
TCCCATGATCCTTCTGTCTGAGTTTTCCTGGGTAGCTCTTGAGCATTTAT
TCTCCTTAAAATTCCCCTCTTTCATTTCCTTGAGTTGATTTTCCCCTGTT
TTCTTACCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no087_d19.b1 MSMg01no087_d19.b1 CHROMAT_FILE:
MSMg01no087_d19.b1 PHD_FILE: MSMg01no087_d19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:39:16 2005
         (323 letters)



>mm_chr13_4861263_4861985
          Length = 723

 Score =  536 bits (277), Expect = e-157
 Identities = 310/321 (96%), Gaps = 4/321 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatgactatcc-tttgaaagtatgagcccatgtactaataatcatgttatcttgg 63
           ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 gaattcatgacta-ccatttgaaagtatgagcccatgtactaataatcatgttatcttgg 465

                                                                       
Query: 64  gcaatctacatcaaagtatcttctcaagctcccccaaacaaatcagaagtgtctacagtt 123
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 464 gcaatctacatcaaagtatcttctcaagctcccccaaacaaaacagaagtgtctacagtt 405

                                                                       
Query: 124 ctgaataaacaatgaaccagtgagaaaaactgggccttaatcatcactgatgctcttgca 183
           |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 404 ctgaataaacaatgaaccagtgagaaaaactgggccttaaccttcactgatgctcttgca 345

                                                                       
Query: 184 tgcatctccattgctataggggagaggtgagaaaaaggtgtgcctgctcagacagattaa 243
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 tgcacctccattgctataggggagaggtgagaaaaaggtgtgcctgctcagacagattaa 285

                                                                       
Query: 244 ctactggagtgtcaaccattgatatcacaagcactatatctcctcgaccgaactttatat 303
           |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 284 ctactggagtgtcaaccattgatatcacaagcactatatcccctcgacagaactttatat 225

                                
Query: 304 gctttg-tatcataatgcaaa 323
           | |||  ||||||||||||||
Sbjct: 224 g-tttcatatcataatgcaaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)