BAC Information

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BAC

Clone NameMSMg01-088B21
Chromosome13 (Build37)
Map Location 23,310,776 - 23,311,308
singlet/doubletsinglet
Overlap genenone
Upstream geneV1ri9, OTTMUSG00000000480, V1ri6, LOC665726, V1rh21, V1ri3, V1rh4, V1rh3, V1rh1, LOC665749, V1ri4, V1ri7, V1rh11, OTTMUSG00000000494, V1rh8, V1rh7, LOC382740, LOC432735, V1rh9, OTTMUSG00000000514, V1rh10, V1rh20, V1rh18, V1rh6, V1rh5, V1ri2, V1ri10, V1rh14, LOC100040639, V1ri5, V1rh13, V1rh12
Downstream geneV1rh16, OTTMUSG00000000541, Zfp322a, Abt1, Btn1a1, Btn2a2, Hist1h4h, Hist1h2af, Hist1h3g, Hist1h2bh, Hist1h3f, Hist1h4f, Hist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d, Hist1h2be, Hist1h1e, Hist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe, Hist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a, Trim38, Slc17a2, Slc17a3, Slc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn, Lrrc16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-088B21.T7 (MSMg01no088_b21.b1)MSMg01-088B21.TJ (MSMg01no088_b21.g1)
ACCAG306958AG306959
length689763
length of high quality
(start - end)
546 (13 - 558)321 (124 - 444)
definitionCHROMAT_FILE: MSMg01no088_b21.b1 PHD_FILE: MSMg01no088_b21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:28 2005CHROMAT_FILE: MSMg01no088_b21.g1 PHD_FILE: MSMg01no088_b21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:29 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
AGCTCCTATAGGGAGAGGATCCGCGGAATTCTATCAAAATTCATAGTGAT
TCTATCATGTTAGTTCAAGAAATTCCATTTCCTGAACTTGAAGGTATGCC
TTCTAAAGATTAGTGCCACAAGGATAACTTGGAAAACGTCAATGTGTCTG
TAAGTATCCAACCACAGAAAATATTTTATATAACTATGAAAGAATGATAT
GTACTGTGAATTAAGTCAGTAGGAGCCCAATGCACCAGACAGGAATTTAA
ATGCCCTGGATCATGTCGATGATGTTATACTCGTGAAAGTTCTCTACAGG
AGTAAACACTGGCTATATGGGGTAAAAAGAATACACAGTATAGTTTTATT
CTAATCCCATCTATAGTTTCTATGTTGATTAAAAATTTTGAATTTGTCTT
TTACTAACTGATTCGATGAGTGTGACTGAAGCCGAGCAAGCCTGGTTTGC
AGGTACCCTTTGTTATTGCCCCGCTGCTCTCCACAGCACAGTGCAGCCAC
ACCATCATAGTACATATCACCAAAGAGCATCGAAATAATCTGATTCATTT
AAATGAAGGAGTCCCTGCTTATGCACTTAAATTGTATCCATACAATAAGA
TAGTGACATGGTTCGAAGAATCTGATGGGCACATTCTGAAAAATACTTAC
CGATATAATCCTTTAACATGAATTTAATTTGAGTTGTTC
NNNNNNNNNNNNNNNNNTTTTTTTTCCCCCTTTNCCCCTTATTAAATTTC
CGATGATAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACACTGGTGAGAAGCCATATACTTGTA
CCGAGTGTGGGAAATCCTTCACCCAGAGAGGTCACTTTATGGAGCACCAG
AAAATTCATACAGGAGAAAAACCTTTCAAGTGTGAGGAGTGTGAGAAAAC
CTTCACCAGGAGCACACACCTCACTCAACATCAGAAAATTCACACTGGGG
AGAAAACTTACAAGTGTAATGAATGTGGGAAGGCCTTCAATGGCCCATCA
ACGTTTATCCGTCACCATATGATTCATACTGGAGAAAAGCCTTATGAGTG
TAATGAATGTGGCAAAGCCTTCAGCCAGCACTCCAACCTGACTCATCATC
AGAAAACACACACTGGTGGAGAAACCCTATGACTGTGCAGAATGCGGGAA
AGCCTTTAGTTACTGGTCATCCCTAGCTCAGCACCTGAAAATTCATACAG
GATAGAAGCCCTACAAGTGTAGCGACTGCGGGAAGGCCTTCAGTTACTGC
TCCTCCCTTACTCAGCTTCGGAGGATTCACACCCGAGAGAAGCCCTTTGA
ATGCAATGAGCGTGGAAAGGCTTTCTTCTATCTGGTCAAACTTTAACAGC
ATCATAATAATTCATTCCCAGGAGAAAGCCTATGAATGTAAGGAACGTGG
GTACAGCCTTTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no088_b21.b1 MSMg01no088_b21.b1 CHROMAT_FILE:
MSMg01no088_b21.b1 PHD_FILE: MSMg01no088_b21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:40:28 2005
         (546 letters)



>mm_chr13_23310563_23311508
          Length = 946

 Score =  917 bits (474), Expect = 0.0
 Identities = 519/534 (97%), Gaps = 2/534 (0%)
 Strand = Plus / Plus

                                                                       
Query: 14  gaattctatcaaaattcatagtgattctatcatgttagttcaagaaattccatttcctga 73
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 214 gaattctatcaaaattcatagtgattctatcatgttagttcaagaaattccatttcctgt 273

                                                                       
Query: 74  acttgaaggtatgccttctaaagattagtgccacaaggataacttggaaaacgtcaatgt 133
           |||||||||||||| |||||||||||||||||||| ||||| |||||||||| |||||||
Sbjct: 274 acttgaaggtatgctttctaaagattagtgccacagggatatcttggaaaacttcaatgt 333

                                                                       
Query: 134 gtctgtaagtatccaaccacagaaaatattttatataactatgaaagaatgatatgtact 193
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 gtctgtaagtatccaaccacagaaaatattttatataactatgaaagaatgatatgtact 393

                                                                       
Query: 194 gtgaattaagtcagtaggagcccaatgcaccagacaggaatttaaatgccctggatcatg 253
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 394 gtgaattaagtcagtaggagcccagtgcaccagacaggaatttaaatgccctggatcatg 453

                                                                       
Query: 254 tcgatgatgttatactcgtgaaagttctctacaggagtaaacactggctatatggggtaa 313
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 454 tcgatgatgttatactcgtgaaagttctctacaggagtaagcactggctatatggggtaa 513

                                                                       
Query: 314 aaagaatacacagtatagttttattctaatcc-catctatagtttctatgttgattaaaa 372
           ||||||||||||||| |||||||||||| | | |||||||||||||||||||||||||||
Sbjct: 514 aaagaatacacagtaaagttttattcta-tgctcatctatagtttctatgttgattaaaa 572

                                                                       
Query: 373 attttgaatttgtcttttactaactgattcgatgagtgtgactgaagccgagcaagcctg 432
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 attttgaatttgtctttttctaactgattcgatgagtgtgactgaagccgagcaagcctg 632

                                                                       
Query: 433 gtttgcaggtaccctttgttattgccccgctgctctccacagcacagtgcagccacacca 492
           |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 gtttgcagctgccctttgttattgccccgctgctctccacagcacagtgcagccacacca 692

                                                                 
Query: 493 tcatagtacatatcaccaaagagcatcgaaataatctgattcatttaaatgaag 546
            |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 ccatagtacatatcaccaaagagcatcgaaataatctgattcatttaaatgaag 746


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 946
Length adjustment: 10
Effective length of query: 536
Effective length of database: 936
Effective search space:   501696
Effective search space used:   501696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)