BAC Information

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BAC

Clone NameMSMg01-089I08
Chromosome13 (Build37)
Map Location 80,839,652 - 80,839,922
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666925, LOC382780, EG666933
Downstream geneArrdc3, LOC666964, LOC100043074, LOC218368, LOC666979, EG666984, Gpr98, Lysmd3, Polr3g
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-089I08.T7 (MSMg01no089_i08.b1)MSMg01-089I08.TJ (MSMg01no089_i08.g1)
ACCAG307999AG308000
length7721,184
length of high quality
(start - end)
274 (114 - 387)---
definitionCHROMAT_FILE: MSMg01no089_i08.b1 PHD_FILE: MSMg01no089_i08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:21 2005CHROMAT_FILE: MSMg01no089_i08.g1 PHD_FILE: MSMg01no089_i08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCCCCCCCCTCCCCCCCCCTCCGTCCCTCCCTTNCCTTCCCTTNCCCC
CCCCTTGGAGAGAATATTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCGCGGAATTCAGAAAATTGCCAAATGAAACAAAAATT
ATGCTAAATAAGACATGAAAGAACAACTATATTCAGATTCCACTTACATG
AGTATTTTAGTTCCCTCCTACCCAATTTAAGATATCTTTTACTTTAGACT
GGGTAATTTATAAGTAATGGAAATTTACTTTTCAAAGCTCTTGAGGATAT
AAAGAATAAGATCAAGATGAATGCAGATTTGGTGTCCAGTGAGGAAGTGG
TCTTTGTTTCAGAGATGTCATGTTCTTGCTGCATGTGTACATGGTCAAAG
GGCAAAAAAGAATGAAGTGTCCCATACAGGTCTTTTCATACGCCCCCGAA
TCCCATCCATGTATGTGCGTATGATATGCACATATGCGCCAATATATCTG
TACTCCTCTTACCACATCCCTGAATTTGGCTGACCATCTTCTTTCCGGAG
CACCTAAGTTCATATAGGTTCCACACGATCCCTGTGCTTATCGTTTATTT
TATTACGCTATATCTTGGCTTCCCCGCCCATCTCATATCCCTATGCAGAC
TTTCTGACCCGTTTCTATCCCTTGTCTTATTCCTTATGTGTTTATGCCTG
CATCCCGTTCTGGCTTTGCCTTTGTCCTTGTTATCCCCGTATCAAGGCCG
TTGCCATCCTTTCTGAAGCAGA
NTTTTTTTTGTTCTTGTTTNNCTTTTTTTCGTGGTTGGTGNCGCGGCGGT
GGGGTACGGTTTAGCGGTTATGCGTGGGTATGGGAGTGAGAGGAGAGTCC
GTGAGAGAGGAGGNGCGGGATGGGTAATAAGTGGATCGATGAGAGAACTG
TTGTGAAAGTCGCTGTATGCAGCAGAGGTGGCACTGCTGGTGGATGGTGA
GAGCGACGTCTTCAACTACTACGCTCTTAGATATAACCTTTACTATCCCC
GTATGTTCCACGTCTTCGGCGTGGGGGGCGGGGGTTCGCCCCGTTCTATC
TATAGATCGCTCCGCCCAGGTGCATAAGCGTCGTTCGGTGATTACGCCCT
TTCGTTTATCTTCGTTTTTATGTTGTACTGTATAATCCTCGACGCCCATA
ACCGATCGCGTTAGTAGATATAGAGTGTATCATAACACGCATATATAATA
ACCTTCAAGCCCCGTTTTGAGTTTCCATACCCGAACTCTCGTGCATATCG
TATCGCGTCTTAGTTGNCAATTTCACGTGGTGACATACTGCGACGCGCAT
ATAAGTAAAAATATTAATTAAGTATATGCGAAATGCTTAAAGACAGCTGA
TAATCCGATATACACCAATACCCCAATAACACCCCATACCCATTATAATC
CCTATATTTTAATATACTTCCCCTATATTNAATACACTACCATTACATAT
CATTATATATTGCTCCCTATATTAAGCACATGAAATAATCATACACTAAA
GATCACGTATCATATAATATATCACATCACCTTAACAAATGACGCGCGCC
CTACGTGGCGTATGTCTATCATATCAAAGTAGGACGATAGCCGCATATAT
GTACCCTTTGCGTGCATACTACTATATCATATTCGAATCCGGTCCCAAGA
GATAGAACGTACAATAGATATATAATACCATACACAGATTATATTAATTC
ACGACGCCCGACCGCCTCATCTGCGATGTATTTATATACCTGCATAACCG
CATATAACGATATATATATATAATAACGTACCCGGGTGCGCCGATTTGAT
GCACGCGAGATAATGTATTTCTGTCAAACACGTTAATAAGTCTTATTATA
TAATGTCGCGCATTGATCAGACGTGTATGCGATGTGTAGCTGCGCGCGCG
ACGGATAGTATCACTTTTATTACACGCTATACCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no089_i08.b1 MSMg01no089_i08.b1 CHROMAT_FILE:
MSMg01no089_i08.b1 PHD_FILE: MSMg01no089_i08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:42:21 2005
         (274 letters)



>mm_chr13_80839448_80840122
          Length = 675

 Score =  480 bits (248), Expect = e-140
 Identities = 265/274 (96%), Gaps = 7/274 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagaaaa----ttgccaaatgaaacaaaaattatgctaaataagacatgaaagaa 60
           ||||||||||||    ||   |||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagaaaacatgtt---aaatgaaacaaaaattatgctaaataagacatgaaagaa 261

                                                                       
Query: 61  caactatattcagattccacttacatgagtattttagttccctcctacccaatttaagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 caactatattcagattccacttacatgagtattttagttccctcctacccaatttaagat 321

                                                                       
Query: 121 atcttttactttagactgggtaatttataagtaatggaaatttacttttcaaagctcttg 180
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 322 atcttttactttagactgggtagtttataagtaatggaaatttacttttcaaagctcttg 381

                                                                       
Query: 181 aggatataaagaataagatcaagatgaatgcagatttggtgtccagtgaggaagtggtct 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 382 aggatataaagaataagatcaagatgaatgcagatttggtgtccagtgaggaagcggtct 441

                                             
Query: 241 ttgtttcagagatgtcatgttcttgctgcatgtg 274
           ||||||||||||||||||||||||||||||||||
Sbjct: 442 ttgtttcagagatgtcatgttcttgctgcatgtg 475


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 675
Length adjustment: 9
Effective length of query: 265
Effective length of database: 666
Effective search space:   176490
Effective search space used:   176490
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)