BAC Information

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BAC

Clone NameMSMg01-091M03
Chromosome13 (Build37)
Map Location 53,661,416 - 53,661,645
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040572, Syk, Auh, Nfil3, Ror2, Sptlc1, LOC100040421, Msx2, EG432760
Downstream geneE130119H09Rik, Drd1a, Sfxn1, Hrh2, LOC100040535, Cplx2, Thoc3, LOC100040543, 4732471D19Rik, 4833439L19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-091M03.T7 (MSMg01no091_m03.b1)MSMg01-091M03.TJ (MSMg01no091_m03.g1)
ACCAG309624AG309625
length889690
length of high quality
(start - end)
---229 (131 - 359)
definitionCHROMAT_FILE: MSMg01no091_m03.b1 PHD_FILE: MSMg01no091_m03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:22 2005CHROMAT_FILE: MSMg01no091_m03.g1 PHD_FILE: MSMg01no091_m03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGGATCCGCG
GAATTCCACTGCAGGCTACCACTAGCTTCAAGATAACTGCCAAGGGAATT
CCTCTTCCCGCATTCAACCACAAAGTGGCCCATAGATAGAGGAGCGCAAG
CTACATCGTTGAGCATGGCAGAACGAGCTTGGGTTCCAGTCCACTCTGCT
CAATAGCTTCTTCAGTACAAAATCACGAGTTAGTAAGTACTCTACAGTGG
TCTGTCNATGCGTGGATGGTTCAGCTCTGTGGGTCGTTCCACAAGGCAAA
CTGGTTACCTGGCCAAAACGCCCTGTATTTTCTTCCTGGCACAAAGAGAG
CTCTCCCCGTGTGAAATGTGCCCCTTAGACCAGTTGAACACTCGGCCACA
TTCTTGCTTTCTTTATCTGGGGGGCGCCACCCACCCCTTCCTCTTGTCTC
TCTCGGGCTTACTCCTCTCCTCCACTTCACCCTTTANAAAAAAAANTTTA
TATGCCTCCTTGTCCACTCCCTCTCTNTTTNNNNNNNNNNNNNNNNNNNN
NNNNNTTGGGGNNNNNNNCTCAGCTTAGGNNNNNCTAGGCTGATGGGTCC
NCATAATATAATAATGGAGATGGTNTNTCCTCTTGGATGGGTTCTTTCCN
CCCCCTTACTCCTCCTTCCTCTCATCTTCNANNNNNNNNNNNNNNNNNNN
NNNNNNNNNNTTGGGGNGGGAAAANTGCGAGTNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNCACTGAGGAAGTCAGAGTATANCACCATCT
TCTANNNNNNNNNNNNNNNNNTGGNNNNTTTATGTGACAAGAGACCAACC
ANNCCTACTCTTCCTTCNCTTCCCTAATAACACTCNCNA
NCTCGATGCAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATCCTGAATGAATCTGCCTCTGGC
AACAGGGTGGTTCGACTGGGTTTCGTCGACACAGAGCTAATGACAGTAAA
TGGGATTAGGTCTCTGCAATTAACCTGTGAGTTTACTAATCTTTACTCAT
ATGCAATTAGAGGACTCCAGTTTTTTTGCTGCTCAGTGGGTAGAATATTT
GCATGCCTTAGTTTCTGGTACCACTGACCAGGGTATATTATTTTATGTTA
CTCTTTGTTGTTGTTTGAGACAGAGTTTCTTGGTGTACAGCTGGCTGTCT
TTGAATGCACTTTGGAGACCAGGCTGGCCTCCAACTCACAGAGACCGACC
TGCCTCTGCCTACCAAGTGCTGGGATTAAGGTATGCGTCACCACTGCCCG
GCTATTTTATGTTACACCTATCCTAATATGGGCCAACACCCTATGAACGG
AATACCGAACGATGCTAAACGGCAGGCGCGTTTGATATTACCTTGTGAAG
TGCTCTATTTTATTAGCACAACTGCTTTTATGTGGTCAGTATCTTCTGGG
TTAACCTTATGCCTACCGGCCCCTATATATATGTTACCTTGCTTTTTACG
CACCCCCATATGGGTTTTTTCCCTGTTCCCTTGAATAAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no091_m03.g1 MSMg01no091_m03.g1 CHROMAT_FILE:
MSMg01no091_m03.g1 PHD_FILE: MSMg01no091_m03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:45:22 2005
         (229 letters)



>mm_chr13_53661216_53661845
          Length = 630

 Score =  414 bits (214), Expect = e-120
 Identities = 226/230 (98%), Gaps = 1/230 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   acagagctaatgacagtaaatgggattaggtctctgcaattaacctgtgagtttactaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acagagctaatgacagtaaatgggattaggtctctgcaattaacctgtgagtttactaat 260

                                                                       
Query: 61  ctttactcatatgcaattagaggactccag-tttttttgctgctcagtgggtagaatatt 119
           |||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||
Sbjct: 261 ctttactcatatgcaattagaggactccagttttttttgctgctcggtgggtagaacatt 320

                                                                       
Query: 120 tgcatgccttagtttctggtaccactgaccagggtatattattttatgttactctttgtt 179
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgcatgccttagtttctggtaccgctgaccagggtatattattttatgttactctttgtt 380

                                                             
Query: 180 gttgtttgagacagagtttcttggtgtacagctggctgtctttgaatgca 229
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttgtttgagacagagtttcttggtgtacagctggctgtctttgaatgca 430


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 229
Length of database: 630
Length adjustment: 9
Effective length of query: 220
Effective length of database: 621
Effective search space:   136620
Effective search space used:   136620
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)