BAC Information

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BAC

Clone NameMSMg01-092E10
Chromosome13 (Build37)
Map Location 70,351,318 - 70,351,564
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC218332, Pols, A530095I07Rik, Srd5a1, Nsun2, LOC100042260, 3110006E14Rik, 4930547H16Rik, Med10, EG620143, LOC100042291
Downstream gene4930520P13Rik, EG633042, BC018507, EG620473, Adamts16, 8030423J24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-092E10.T7 (MSMg01no092_e10.b1)MSMg01-092E10.TJ (MSMg01no092_e10.g1)
ACCAG310004AG310005
length735742
length of high quality
(start - end)
248 (72 - 319)70 (121 - 190)
definitionCHROMAT_FILE: MSMg01no092_e10.b1 PHD_FILE: MSMg01no092_e10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:05 2005CHROMAT_FILE: MSMg01no092_e10.g1 PHD_FILE: MSMg01no092_e10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CAACAGTCCCCACCTTACAGTGGTGTGGCAAGTGACTTACTGCTAAGCTA
CACCTCCCCAACTCCCACCGCCACTAAGCCACGCCGCTTCCTATACCACT
AAGCCCCACCTCTCCCACACGCACCACTAAGCCATGTCCCCCATGATTCT
GTCTCATTTTTCATCCCACTTTCCACTGTACCTGCAATCTATTTTTGTCT
ACTTGTTTGGCTTATGTTTGCAGATCGTGTGCCCCTATGCTGGTGCTCCA
TTGGTTGGATCTCCTTGGAGCACCTGACTTTTGTGTCTGCTCATACCGTG
TTTTTTCTCTCCCACCCCCACTGCCCAATCACTTACTCCTAAATACTGTC
GACATCACATTTCCCTCTCTTGAATACTAATTGTCTTGTAGAAACCACGT
TGATACTTGCCTCGCACGCTCACTACTGTAATGAACGACTATATCAGCAT
TAAGTTATCAAAAATTATATTCATTCTATTGACCATAATCCATCAACTTT
TCTAATGCACCCATAATTCACCATTACATCCTTCGACAACAACTTAACTA
TCTGCCTATATTCCTTTTATTGATCCCCACCTTCTATACAACCCCATCCA
TATTACCCACCCACTTGAATCATTTTATCCACCACATCCTCCCGCCAACT
TTCTCCGATTCATTACTTCCCCTATATTTATACTT
TGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAGAGGCCAGAGGGAACTCAGAACAATAGGGAG
TTAAGGCTCATATAACCCATATGCTATGAATAGGGTTTCTAATGCTTGTG
TTCCATCAAGAATCCACTTGTTACAAACCTAACCCACATGTGAGAGGTGC
TGAGTCCAGCATGGCTATATGTCTCCTCACACTCGACGCTGGACCGCAGC
AGACAGGTGTTCTGACACAACTGTCGAATAAAGCCGCATCACAGCATGTA
TCCCTTGCCACTCATACTAGCTTGTGCCATCATTATACTTTTATATCTCC
TTTTATAATTTCTTCCCCCCCCCCTGACCACATCTACCCCCCTGATAATC
CTTTCTATAACCCCCCTTTTATAACTATAAACATTTTTTTTAGCTGCTCC
CCCTCTATTTTCCTACTTACTACTATTACTCTCTTCCTCACCTCTACCTC
CTTCCTTTCCCTGCTATTGTCCCACACTCTCATTTCGTCTCTCTTTACAC
CATAATTATCCCCTTTTTCCTGTTTTTTTCCACCACTTCGCCCCCCTCTT
TTCATTTCCCATCTTATTTTCTCCTTCTCCCCCCCTTTTTTCTTCCCTCC
CTCCTTTTTTTCCTACTCTTTCCTTTCTATTATATTTTTCTTCCTATTCA
CATTCCTAACCCCTTATTTTTTTCCCTTCCCCTCTCTTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no092_e10.b1 MSMg01no092_e10.b1 CHROMAT_FILE:
MSMg01no092_e10.b1 PHD_FILE: MSMg01no092_e10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:46:05 2005
         (248 letters)



>mm_chr13_70351118_70351764
          Length = 647

 Score =  449 bits (232), Expect = e-131
 Identities = 244/248 (98%), Gaps = 1/248 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggtgtggcaagtgacttactgctaagctacacctccccaactcccaccgccactaagcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 201 ggtgtggcaagtgacttactgctaagctacacctccccaactcccat-gccactaagcca 259

                                                                       
Query: 61  cgccgcttcctataccactaagccccacctctcccacacgcaccactaagccatgtcccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 cgccgcttcctataccactaagccccacctctcccacacgcaccactaagccatgtcccc 319

                                                                       
Query: 121 catgattctgtctcatttttcatcccactttccactgtacctgcaatctatttttgtcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 catgattctgtctcatttttcatcccactttccactgtacctgcaatctatttttgtcta 379

                                                                       
Query: 181 cttgtttggcttatgtttgcagatcgtgtgcccctatgctggtgctccattggttggatc 240
           ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 380 cttgtttggtttatgtttgcagattgtgtgcccctatgctggtgctccattggttggatc 439

                   
Query: 241 tccttgga 248
           ||||||||
Sbjct: 440 tccttgga 447


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 647
Length adjustment: 9
Effective length of query: 239
Effective length of database: 638
Effective search space:   152482
Effective search space used:   152482
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)