Query= MSMg01no092_l20.b1 MSMg01no092_l20.b1 CHROMAT_FILE:
MSMg01no092_l20.b1 PHD_FILE: MSMg01no092_l20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:46:42 2005
(439 letters)
>mm_chr13_32733208_32734046
Length = 839
Score = 733 bits (379), Expect = 0.0
Identities = 409/419 (97%)
Strand = Plus / Minus
Query: 21 ggctttgaggttgaacccttgggttatgtacctgtcaccaagaaagtggtttcaatacat 80
|||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||| ||
Sbjct: 639 ggctttgaggctgaacctttgggctatgtacctgtcaccaagaaagtggtttcaatatat 580
Query: 81 ctcaagccaaaacaaccctcagttagcacaggtcagctccatgatggaggctactcctga 140
||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 579 ttcaagccaatacaaccctcagttagcaaaggtcagctccatgatggaggctactcctga 520
Query: 141 tagggagtatggtccttggcaagatggccttgttgacatggggtatggttcccagccaag 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 tagggagtatggtccttggcaagatggccttgttgacatggggtatggttcccagccaag 460
Query: 201 atgatttttgacccagaaggacatttgaaaatgactgtggttgttacagccaagaggagg 260
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 atgatttttgacccggaaggacatttgaaaatgactgtggttgttacagccaagaggagg 400
Query: 261 gcatcttatagttagagcttatggttgttatgaatgctataaataatggcctccaaaacc 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 gcatcttatagttagagcttatggttgttatgaatgctataaataatggcctccaaaacc 340
Query: 321 acaaaagaaacatcccccaaatgccagcagaatatgatgagaattcctaacctaaggcaa 380
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 339 acaaaagaaacatcccccaaatgccagcagaatatgatgagaattcccaacctaaggcaa 280
Query: 381 atcccagggcaactaaaaatttgactatctgcaagcaagttccccaaagccaggaaaac 439
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 atcccagggaaactaaaaatttgactatctgcaagcaagttccccaaagccaggaaaac 221
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 839
Length adjustment: 9
Effective length of query: 430
Effective length of database: 830
Effective search space: 356900
Effective search space used: 356900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no092_l20.g1 MSMg01no092_l20.g1 CHROMAT_FILE:
MSMg01no092_l20.g1 PHD_FILE: MSMg01no092_l20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:46:42 2005
(504 letters)
>mm_chr13_32602550_32603451
Length = 902
Score = 758 bits (392), Expect = 0.0
Identities = 455/504 (90%), Gaps = 46/504 (9%)
Strand = Plus / Plus
Query: 1 tctaaagagcacaaagcttgccaaagtcttctgtttccaggcagaatttgtttcaagttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tctaaagagcacaaagcttgccaaagtcttctgtttccaggcagaatttgtttcaagttt 304
Query: 61 aatgctctactttcagatagttagattttaaataaaggcccgggagtgtggcttggtagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 aatgctctactttcagatagttagattttaaataaaggcccgggagtgtggcttggtagt 364
Query: 121 tgagcatttgcctagcgctctcagtgccttcaggttgatccccagcacctcacacataga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 tgagcatttgcctagcgctctcagtgccttcaggttgatccccagcacctcacacataga 424
Query: 181 aatgaccttgtgccaagcatccgtccatccatccatccatccatccatccatccatccat 240
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 425 aatgaccttgtgccaagcatcc----atccatccatccatccatccatccatccatccat 480
Query: 241 ccatccttccatccatccatccacttaactacctacctacctacctacctacctacctac 300
||| ||||||||||||||||||||||||||||
Sbjct: 481 cca--------------------cttaactacctacctacctacctaccta--------- 511
Query: 301 ctacctacctatccatccacctatatatctttgctgcaagcttttgttagattttccgca 360
||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 512 -----------tccatccacctatatatctttgctgcaagtttttgttagattttccgca 560
Query: 361 ctgatcataagttattatttatttggtatatgaacatatttagcatacacaaattatatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgatcataagttattatttatttggtatatgaacatatttagcatacacaaattatatt 620
Query: 421 tgcgtttatttttaatacagcttgctgtctggtaataacaacaaatacacacactctctc 480
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgtgtttatttttaatacagcttgctgtctggtaataacaacaaatacacacactctc-- 678
Query: 481 ccaatctcccattatttttccatt 504
| ||||||||||||||||||||||
Sbjct: 679 caaatctcccattatttttccatt 702
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 902
Length adjustment: 10
Effective length of query: 494
Effective length of database: 892
Effective search space: 440648
Effective search space used: 440648
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
