BAC Information

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BAC

Clone NameMSMg01-093P09
Chromosome13 (Build37)
Map Location 35,875,921 - 35,876,171
singlet/doubletsinglet
Overlap geneCdyl
Upstream geneEG432746, LOC666677, Prpf4b, 4933417A18Rik, LOC666697, 1810022C23Rik, Peci
Downstream geneRpp40, LOC100041568, Ppp1r3g, Lyrm4, LOC100042773, Fars2, LOC100041590, LOC666758, Nrn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-093P09.T7 (MSMg01no093_p09.b1)MSMg01-093P09.TJ (MSMg01no093_p09.g1)
ACCAG311264AG311265
length1,0881,259
length of high quality
(start - end)
194 (23 - 216)254 (64 - 317)
definitionCHROMAT_FILE: MSMg01no093_p09.b1 PHD_FILE: MSMg01no093_p09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:49:21 2005CHROMAT_FILE: MSMg01no093_p09.g1 PHD_FILE: MSMg01no093_p09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:49:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCCTTAATATCGACAATANGACCATAATTGCTCTGCTGTATTATTGTCAT
TGTTAATCTCTTACTTACCTAATATATAAATTAGACAGTATCCCAGGTGT
GAATATAGCATATCCACAGTTGAATATGGTTTCCAGCATTCAGTGAGCAT
CTTGGAATGTCTCCTCCACCAATAAACGGGGGCTGCTCTCATACCAGTGT
TTGTCCAGTTCTCCCCGTGACCCTGTGCCATCAGCATGGATTGAGATAGA
GTGAAGCAAGAGAGATCCTGAATGCAAAGAACAAGATTTTTTTTTCTCAT
AGTGTGGTGCGAGTTTAGGTCTGTATCTGAATACACACCCTTTTTTTTGC
CCCCCCCCAATTTCTCATAGCCTTCTTAAAAAAACAATCTCCACCTTGTT
CTTCAAAATCTACTATTATCTTCCTCCCCTGCTTGCATTCCTTTGTTTGA
TTACCTTTATAACTCCATATCAACTTCTATCTTGATTTTCTGCATCTTCC
CTTTTTCTCTTCTTATTTGATCCAGCTTTCTCTATTTTTCTTTTCTCTTG
TTCTTCTATTATATCTCTTATCTCTTTTATTTTGTCTCTCAATTTCGCTT
AAAATTATTCTTTTTTTGTTTCTTTTTTCCCTTTTTTTCTTTCTTCTTTA
TTTATTTTTTTTTTGTTCCTCTCTCCTCTTTTTTTTTTTCTCATCTTATT
CTTTTTCTTTTTTTTTTTTTTTATTTTTCTTCTTTTCTTTCTTTTTATAT
CTCTCCTTCTCTTTTTTTCTTTATCTTCTTATTTCCCCCCTTTTTTTTCT
TTTTTCTTTTTTTTCTTCTTTTTTTTTTTTCTTTTCCCCATTTTTTACTC
TTGATTTTACCTTTTTTTCTTTTCCTTAACTTTTCTTCTTTTTTTTTTCT
TTTTTTTTTTTTTTTTCTTCAATTTTTTTTTTTTCTTTTTTTATTTTATT
TTCTCTCTACCTATTTTATTTCATTTCTCTCTTCTCCATAATCCTTATTA
TCTTAATTACCTTTTTTTATTACTTTTTTTATTTTTTCACTTCAATGCTT
TATTCTTTTCTTTATTCATATTATTTTATTCTCTTATT
NTTCTTCAGGGGAGCCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCCATTTCCCATACAGTGATGGCAATCACTACCCTCTG
GTTTACATTTCACATCTCTGACCTGTTGCTCCCACCATGAGAGTTTGGCA
GCCACTGGGGTGAACAGGTGAGAGAGAGATTAATAGTGCTGAGGCGAGAT
GGGATTCTACCTCACATCATTAAGATCAATATAATTTAGTGCGCAACTAG
AATACACAAAAAAAGCTGACCCCACGGCTACTGACATCCAAGACTGTGTG
TGCCAAGAGTGGAGTAACATTCGCGAGTATTCTGACACTCTACATTTCAC
TCTGGGTGTGAGGCAAAGCCTTGTTACTACAGCATTCAGTCCGTTTTTTT
TATGGTACTGTATCTCACCACCTCCTTACTATGCTCTTACGGCTGCTTTT
TTTTCCCCCCCCCCCGANATNATTTTGAACCACTTAAAAAAGGGGCCACT
CACCCAGCACACCGACCCTGTCTCCCCTCACACCACTTCCTGTGTCCGTG
TCCATCATGCCTCTTCTTCTGAGGAACTGATACCGCTACAGACCCATTTC
CCACTGAACAAGTGGATGGTGTTACGTATCGTTAAACTGCCTTAACTCAT
CAATACTAGTATTATTAAACTCTTACTGCAAGCACTCCTTGTGATGCTTA
CTCCCCTGTGTATACATAATCTATTGTCTGTCTTCGTGCGTTACTTCTCT
ACTTTCCTTTTTGACGTTGTTTATTCTTGCTGTTTCGTTTTCCTTGATTT
CTGTTTGTCTTGTTATCCTCGTCTTTACTCTTCTTTTTTTCATGGATTTC
TATCCCTTCCTTGTGGTTTACTGTTGTTTATTTTTCTCCTTTGTCTTGTT
TCTATTTTCTCCCAATTGGTTGTCTCTCTGCTCTCTTATCTTTTTCTCTT
GCTCTTTTCTTTGGTATCCTCGTCTCTGCCTTTATTTCTTGTACTTTCTC
TTTTCCCTCCCACTGCTTTATCTGTTTATACCTTTCCTTCTTGTCTTTCT
TTTTCTATATCCTTTTCCAACNTNTTAATTNATTNNGCTTTTACGNTTAT
TCTGTTTATCTTCCTCGAATGTATACCCCTCTTTGCTTACTGTGTAATCT
TCTTCATATTATATATCTCTTTTTCTTGTCTTATCTCTTACGCTTTCTTT
TCTTTTTGTCTTTGCGATTCCTACTTTCTACGTCTGCCATCTTATCTCAC
TCGTTAATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no093_p09.g1 MSMg01no093_p09.g1 CHROMAT_FILE:
MSMg01no093_p09.g1 PHD_FILE: MSMg01no093_p09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:49:21 2005
         (254 letters)



>mm_chr13_35875717_35876371
          Length = 655

 Score =  447 bits (231), Expect = e-130
 Identities = 246/251 (98%), Gaps = 1/251 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   ttcccatacagtgatggcaatcactaccctctggtttacatttcacatctctgacctgtt 64
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 455 ttcccatacagtgatggcaatcactgccctctggtttacatttcacatctctgacctgtt 396

                                                                       
Query: 65  gctcccaccatgagagtttggcagccactggggtgaacaggtgagagagagattaatagt 124
           ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 gctcggaccatgagagtttggcagccactggggtgaacaggtgagagagagattaatagt 336

                                                                       
Query: 125 gctgaggcgagatgggattctacctcacatcattaagatcaatataatttagtgcgcaac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 gctgaggcgagatgggattctacctcacatcattaagatcaatataatttagtgcgcaac 276

                                                                       
Query: 185 tagaatacac-aaaaaaagctgaccccacggctactgacatccaagactgtgtgtgccaa 243
           |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 275 tagaatacacaaaaaaaagctgaccccgcggctactgacatccaagactgtgtgtgccaa 216

                      
Query: 244 gagtggagtaa 254
           |||||||||||
Sbjct: 215 gagtggagtaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 254
Length of database: 655
Length adjustment: 9
Effective length of query: 245
Effective length of database: 646
Effective search space:   158270
Effective search space used:   158270
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)