Query= MSMg01no094_g03.b1 MSMg01no094_g03.b1 CHROMAT_FILE:
MSMg01no094_g03.b1 PHD_FILE: MSMg01no094_g03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:00 2005
(213 letters)
>mm_chr13_89028606_89029218
Length = 613
Score = 379 bits (196), Expect = e-110
Identities = 202/204 (99%), Gaps = 1/204 (0%)
Strand = Plus / Minus
Query: 8 gaattcaatttctacaagtttgtgggtaacctgggctacacagtgagaacaagaccaccc 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 gaattcaatttctacaagtttgtgggtaacctgggctacacagtgagaacaagaccaccc 427
Query: 68 agatctacatagtaacgttctcattttgaacaaatagcaaacaattttttaaagtcctag 127
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 agatctacatagtaa-gttctcattttgaacaaatagcaaacaattttttaaagtcctag 368
Query: 128 aagtaaatgagtccatgaggccaatattaaaatgggaaagaggaggtcaataaaaaaacc 187
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 367 aagtaaatgagtccatgaggccaatattaaaatgggaaagaggaggtcaataagaaaacc 308
Query: 188 tacaaaacatatggtaccccatgg 211
||||||||||||||||||||||||
Sbjct: 307 tacaaaacatatggtaccccatgg 284
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 213
Length of database: 613
Length adjustment: 9
Effective length of query: 204
Effective length of database: 604
Effective search space: 123216
Effective search space used: 123216
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no094_g03.g1 MSMg01no094_g03.g1 CHROMAT_FILE:
MSMg01no094_g03.g1 PHD_FILE: MSMg01no094_g03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:00 2005
(600 letters)
>mm_chr13_88988033_88989032
Length = 1000
Score = 1091 bits (564), Expect = 0.0
Identities = 591/600 (98%)
Strand = Plus / Plus
Query: 1 ttgtcccaaaatcccaggaagagtcaaagcagggaaaatgtgattgcagtattggtaaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 201 ttgtcccaaaatcccaggaagagtcaaagcagggaaaatgtgattgcagtactgctaaga 260
Query: 61 tccgtttcctcaaaaatgtcaacctacagacatcttgcttaacgcaaaagagacaattta 120
| |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 tacgtttcctaaaaaatgtcaacctacagacatcttgcttaacgcaaaagagataattta 320
Query: 121 aaagagaaatatgggagggtagtgttttagccctgctgcccaatactgcagattgttcct 180
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaggagaaatatgggagggtagtgttttagccctgctgcccaatactgcagattgttcct 380
Query: 181 gtgtgagtacagattccttgaaatgtgggcatatgcaattaatgtgtctagtgacttcag 240
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgtgagtacagatttcttgaaaagtgggcatatgcaattaatgtgtctagtgacttcag 440
Query: 241 actacacaggagattttaaagataataacaaaagttatgattctcatcactgtatttatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actacacaggagattttaaagataataacaaaagttatgattctcatcactgtatttatt 500
Query: 301 caagggcaatgaacgttgttattgttgtcattattaattagatatattctttacaaactt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caagggcaatgaacgttgttattgttgtcattattaattagatatattctttacaaactt 560
Query: 361 tatgtatgtgtatactgcatacttgtcaccatgaaatcccttccctgctgtctttatccc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tatgtatgtgtatactgcatacttgtcaccatgaaatcccttccctgctgtctttatccc 620
Query: 421 tctcttcactctccttccactcccctattcttcccttccactcctgtctacacttttgtg 480
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 621 tctcttcactctccttccactcccctattcttccctcccactcctgtctacacttttgtg 680
Query: 481 ccgcctaattttatatcaacttgacacaagctggagtcatcttggaaaatgaaccctcaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccgcctaattttatatcaacttgacacaagctggagtcatcttggaaaatgaaccctcaa 740
Query: 541 ttgacaaaatgcactcaaaggcttggcctgtggggaagcctatggtgaattttttttttt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttgacaaaatgcactcaaaggcttggcctgtggggaagcctatggtgaattttttttttt 800
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1000
Length adjustment: 10
Effective length of query: 590
Effective length of database: 990
Effective search space: 584100
Effective search space used: 584100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
