BAC Information

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BAC

Clone NameMSMg01-094L02
Chromosome13 (Build37)
Map Location 88,945,608 - 88,946,163
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667230, EG435375
Downstream geneEdil3, Hapln1, EG667266, Vcan, LOC100042940
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-094L02.T7 (MSMg01no094_l02.b1)MSMg01-094L02.TJ (MSMg01no094_l02.g1)
ACCAG311791AG311792
length766694
length of high quality
(start - end)
314 (133 - 446)554 (70 - 623)
definitionCHROMAT_FILE: MSMg01no094_l02.b1 PHD_FILE: MSMg01no094_l02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:27 2005CHROMAT_FILE: MSMg01no094_l02.g1 PHD_FILE: MSMg01no094_l02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCNNNNNNN
NNNNCCCCNNNCCCCNNNNNNNNNGGTTTTGCNTCCTTTCTATXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGTTCA
GTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGAAGTCCACC
TTCTTCAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTGATTTAGG
ATAGGTAAAGATCCTTTCCCAATCTCTTGGTGGTCTTTTTGTCTTATTGA
CGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGTCCCATTTG
TCGATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTTCAGGAATTT
TTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTTCTCCTCTATAA
GTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCACTTAGATTTG
ACCTTACTACAAGGAGATAAGTATGGATCTATTCGCATTCTTCTACAGGA
TAACAACCAGTTGTGCCAGCACCAACTGTTGAAACAGCTGTCTTTCTTCC
ACTGGAAGGCTTTAGCTCCCTTGCCGAAGATCACGTGAACTTAGGTGTGT
GGGTTCATTTTCTGGATCTTCCATTCCTATTCTATTGTTCTATTTGTCTT
GTTTCTTATCCTATACCTTGGTTGCTTTTACCACAATTGCTCTGTACTAA
AGCTTCTAGCCACGCT
GATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXACTTTGAGGAAAACTTGGCAAGAAAGAGCAC
CACATGTCTCTGCCTCCCTAGCACTGGGATCAAAGGTGTGGGCCAACACA
CCCAGGTTTGCCCAAAAGTTTTAAACATATGATCTAACTTACAAACCTTT
CAGTTATATTTACTTATTACAATATTATAGGCATATATTAAGTGAGATAA
GACTATTCAAACTGACTTTTGATTACGGTTCCAGTTTATGTATGTAAATA
AAGTTTATTCGATTTATATAAAATTATAGGATATATGCTGTCTCTAAAAT
CTTTTACAAAAATTTTCATTAATGTTAGCTTTAGAAAGCCACAGAAAACT
ATTTTATGCTTTACAAATAAAGGGGTCACTTTCTGGTTTGTGATTTTGTT
AAATGCCCTGGCACCTTGCCAAGCCAAGAAACCTCTCCTGAAACCACTTC
CTGTAGTAAGCTGAAAGCTAACAGCGTCTATTTATTTTAAAAAAATGTGT
AAGTCTGAGAACTCTTCAGTTGGGTATTTTAGCTTTTAATGACATTCTCT
TCATACTCAAGCAGAAAAGAATAACAAAGAAGGATAACAGTCAGGGCCAG
TGAGATGTCTTGTAGGATAAAGGGCTTGCTGTACAGGCCTGGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no094_l02.g1 MSMg01no094_l02.g1 CHROMAT_FILE:
MSMg01no094_l02.g1 PHD_FILE: MSMg01no094_l02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:27 2005
         (554 letters)



>mm_chr13_88945318_88946272
          Length = 955

 Score =  936 bits (484), Expect = 0.0
 Identities = 538/556 (96%), Gaps = 2/556 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   actttgag-gaaaacttggcaagaaagagcaccacatgtctctgcctccctagcactggg 59
           ||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 846 actttgagataaaacttggcaagaaagagcaccacctgtctctgcctccctagcactggg 787

                                                                       
Query: 60  atcaaaggtgtgggccaacacacccaggtttgcccaaaagttttaaacatatgatctaac 119
           | |||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 786 accaaaggcgtgggccaccacatccaggtttgcccaaaagttttaaacatatgatctaac 727

                                                                       
Query: 120 ttacaaacctttcagttatatttacttattacaatattataggcatatattaagtgagat 179
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ttacaaacctttcagttatatctacttattacaatattataggcatatattaagtgagat 667

                                                                       
Query: 180 aagactattcaaactgacttttgattacggttccagtttatgtatgtaaataaagtttat 239
           |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 aagattgttcaaactgacttttgattacggttccagtttatgtatgtaaataaagtttat 607

                                                                       
Query: 240 tcgatttatataaaattataggatatatgctgtctctaaaatcttttacaaaaattttca 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 tcgatttatataaaattataggatatatgctgtctctaaaatcttttacaaaaattttca 547

                                                                       
Query: 300 ttaatgttagctttagaaagccacagaaaactattttatgctttacaaataaaggggtca 359
           ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||
Sbjct: 546 ttaatgttagctttagaaagccacagaaaactattttatgctttggaaataaaggggtca 487

                                                                       
Query: 360 ctttctggtttgtgattttgttaaatgccctggcaccttgccaagccaagaaacctctcc 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ctttctggtttgtgattttgttaaatgccctggcaccttgccaagccaagaaacctctcc 427

                                                                       
Query: 420 tgaaaccacttcctgtagtaagctgaaagctaacagcgtctatttattttaaaaaaa-tg 478
           |||||||||||||||||||||||||||||||||||  |||||||||||| ||||||| ||
Sbjct: 426 tgaaaccacttcctgtagtaagctgaaagctaacaatgtctatttatttaaaaaaaaatg 367

                                                                       
Query: 479 tgtaagtctgagaactcttcagttgggtattttagcttttaatgacattctcttcatact 538
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 366 tgtaagtctgagaactcttcagttgggtattttagcttttaatgacatcctcttcatact 307

                           
Query: 539 caagcagaaaagaata 554
           |||| |||||||||||
Sbjct: 306 caagtagaaaagaata 291


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 955
Length adjustment: 10
Effective length of query: 544
Effective length of database: 945
Effective search space:   514080
Effective search space used:   514080
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)