BAC Information

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BAC

Clone NameMSMg01-095B11
Chromosome13 (Build37)
Map Location 23,761,446 - 23,761,711
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC382740, LOC432735, V1rh9, OTTMUSG00000000514, V1rh10, V1rh20, V1rh18, V1rh6, V1rh5, V1ri2, V1ri10, V1rh14, LOC100040639, V1ri5, V1rh13, V1rh12, V1rh16, OTTMUSG00000000541, Zfp322a, Abt1, Btn1a1, Btn2a2, Hist1h4h, Hist1h2af, Hist1h3g, Hist1h2bh, Hist1h3f, Hist1h4f, Hist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d, Hist1h2be, Hist1h1e
Downstream geneHist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe, Hist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a, Trim38, Slc17a2, Slc17a3, Slc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn, Lrrc16, LOC100042017, Cmah, 5830431A10Rik, 6330500D04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095B11.T7 (MSMg01no095_b11.b1)MSMg01-095B11.TJ (MSMg01no095_b11.g1)
ACCAG312088AG312089
length701701
length of high quality
(start - end)		663 (39 - 701)290 (73 - 362)
definitionCHROMAT_FILE: MSMg01no095_b11.b1 PHD_FILE: MSMg01no095_b11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:00 2005CHROMAT_FILE: MSMg01no095_b11.g1 PHD_FILE: MSMg01no095_b11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAATTC
CAGTTTTATGCTTGATGCCAATTCTTTACAAATGAAGTAAAATTCTTGCT
AGAATAGGATGCCCCGTTATCTGTCTTAATAAGTTTAGACAATCCCATGG
CATTAAAGGCTTGTAGGCAATGATCAATTACATTTTTAGAGGCCTCTCCT
GTACGCAGAGAAGCAAAAGGAAATCCCGAACAAGTGTCAATACAAACATG
TATATACTCTAATTTTCCAGATTCCTCATAAAGAGTTACATCCATTTGCC
AAATATGATTAGGCATAAGACCTCATGGATTAACTCCTAAATGTGGCACT
GGAGATAATGTAATACATTTAGGACAATGTTTTACAGTATCTGTCTCTTT
GCCAAAATAAGTTAGTGCATGCTTCTTTCCAAAGATAATCATCTGAGGTA
CTGATTCATAATATGTCAAGATATTACATTTAGGAGAAATCCTCGAATGC
ATCCACATTAGAGGAGACTTTTGCCATAACAATCCTGTAGGCATGTAAAG
GCAAAGAGTAATCTATATAAGTGACAAATTGCTCTTCAATAACTTTTCCC
ACTTGTTGTAAGGCCAGCAATCCTTCTGAGGTTAAAGATCTAGGGTAGGT
TGGATCAGAACTCCCTTTAAGAATATCAAACAAAGGTTTCAACTTCCTTG
T

CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTCCAGGGTTCTCAGAGCTCTCTTGTT
GGTCCACAGTCCACTTGTTTACTATGAGCTGGTTAACTAAGGACCCTAAA
TTGACATATATATATATATTTTTTTTTTTTGGTTGCCTTTCAAAGTTTTT
GGTTTATGGTACTAAGTTTGCCTTGATCCAGACCTTTGATTTCATTATTT
GTTTGCTTGTTTTCAAATCTCTAAAGACATTTTGGGTTTTATTTGCTTTT
GGAACTCTGAAGCAAATATTGGTTTCTGTTTTCGTTTGTCATTGCTTTTG
CCTTTGGTGTGTCTCGCCCCCCCACCGCTTGGCCTTTTTGTCCTGATTTT
TCCCTCTCAAATACCTAATTCTGAGAATTTCTGTTGCATCTCTTGTGACC
TTAGGAAGCCGTTCACTTACGATATTTATAGGCACTTTTTCATATGGTGA
AAAAAGAGACGTGCTGCTATTACGCTGAGGTTTTATCCTTTATTTTCCCC
TCTGTTTCCTTCTTTTCGCTTATCTTTTTTTTTCTCTCACCCCTCTCACA
TATCTTTTTTTTCTCTCCTCTATTTCATTCTTTCTTATATATACTTGACT
TTTTATTTTTCTTCTCTCTTTGTTTTTATTTTTTTCCTCGCTTTTATCTT
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_b11.g1 MSMg01no095_b11.g1 CHROMAT_FILE:
MSMg01no095_b11.g1 PHD_FILE: MSMg01no095_b11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:00 2005
         (290 letters)



>mm_chr13_23761223_23761911
          Length = 689

 Score =  410 bits (212), Expect = e-119
 Identities = 260/290 (89%), Gaps = 24/290 (8%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttccagggttctcagagctctcttgttggtccacagtccacttgtttactatgagctgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 tttccagggttctcagagctctcttgttggtccacagtccacttgtttactatgagctgg 283

                                                                       
Query: 61  ttaactaaggaccctaaattgacatatatatatatattttttttttttggttgcctttca 120
           |||||||||||||||||||          ||||||||||             ||||||||
Sbjct: 284 ttaactaaggaccctaaat----------atatatattt-------------gcctttca 320

                                                                       
Query: 121 aagtttttggtttatggtactaagtttgccttgatccagacctttgatttcattatttgt 180
           |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 321 aagtttttggtttatggtactaagcttgccttgatccagacctttgatttcattgtttgt 380

                                                                       
Query: 181 ttgcttgttttcaaatctctaaagacattttgggttttatttgcttttggaactctgaag 240
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 381 ttgcttgttttcaaatctctaaagacattttgggctttatttgcttttggaactctgaag 440

                                                             
Query: 241 caaatattggtttctgttttcgtttgtcattgcttttgcctttggtgtgt 290
           ||| | |||||||||||||||||||||||||||||||| |||||| ||||
Sbjct: 441 caatt-ttggtttctgttttcgtttgtcattgcttttgtctttggcgtgt 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 689
Length adjustment: 9
Effective length of query: 281
Effective length of database: 680
Effective search space:   191080
Effective search space used:   191080
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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