BAC Information

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BAC

Clone NameMSMg01-095F24
Chromosome13 (Build37)
Map Location 39,498,586 - 39,498,898
singlet/doubletsinglet
Overlap genenone
Upstream geneBmp6, Txndc5, Muted, Eef1e1, LOC621102, Slc35b3, EG666867
Downstream geneLOC100041779, LOC382747, A230103O09Rik, Ofcc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095F24.T7 (MSMg01no095_f24.b1)MSMg01-095F24.TJ (MSMg01no095_f24.g1)
ACCAG312304AG312305
length7091,098
length of high quality
(start - end)
323 (29 - 351)---
definitionCHROMAT_FILE: MSMg01no095_f24.b1 PHD_FILE: MSMg01no095_f24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:22 2005CHROMAT_FILE: MSMg01no095_f24.g1 PHD_FILE: MSMg01no095_f24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGCGGCGCTATACGACTCCTATATGCAGAGGATCCGCGGAATTCTAATCC
TCATCCTTGCCTCTGCATTTGATTCGTTTTACAGTAGCATGAATTAAGAT
CAGGACTATGTGATGCATTATATACTATACACTATAGATAGGCATGGTCC
ATAAAGCCTACAGGCCTCTGAAAAGTGTATAACTTGGTAGAAACTTAAGT
AAATAGAATATTAATGATAATTAATAACAGTAGAAGGCATTAAATGTTCA
CATTAAACATGCTGTCAAGAGTTACCAGATTATTGTAGTTTGTTTTAAAG
GCCTTAGAAAGCCAATACCTGACTGAAGCATAGACTCTGGGTCTTTTGTC
AACTATTTAACCCAAGGACTTAACTGATTTCACCAAGAGGGTATGAAAAT
TACGGAAATAAACACTGGGAGTGTGTACATGAAGGTGGATTTGTGAAGAT
TACTCAGTGTTATATTAGATAAATGATTTCAGAGAAAGAGAGAGAGGAAG
CCAGGTAAGTAGTAAGCAGGCAAGATGATCCTAGTAGCCAGAAGCATGGG
GCAGTGACACTCCAAAGGGATAAGACTTCTGTCCCTTTCCAATACTGGAG
CCCTGTGAGGCAAAGATTGACAAACTAGGAAACTGTGTTAGAAGCTCTAT
GGAGGCTATGGACGTGTTCAAAGTGTCGACTCTAAGCGTTGGTGTGCCCA
GAAATGCAT
TTATTTTTTTTTTTTCATCATTTTTTTTATATTATAANNNAANNNNNNNN
NATTTGTTTTTTTTTTTGTCTTAGAANNTCTTGAAGGAANNNNTTTCTAA
GAGGANNNCTNTGGATCTTTTAAAAAGGAGTTTAGAAGGAGNNTTTTCCC
CTTTCTTTCAAAAAAGGGGGGAAGAGGGGGNTNNNCTGTTTTTATGGTTT
GTTTATAAATATTTTTTTTTTTCCCTCTAAAACAAAGGAGGGTGTCGTTT
TTTGTCTTTCTTATTTGTATGGTTATCTTCTGTCGGGTGGTGGGGTGTTG
GTGTTGTGGTTCTTTTCTATTTTATTTTTTTTTCTCTCCCCATCATATCT
ATTAAATAAAGATAGAGTGGGGTGGTTGTCTCTCCCTTATTTTCTTCTGT
TACCTCGCATGTTCTGGTTGGGAATACGATCTGAAATATTCGATTTTCTT
TTCTGCTTATTCCGTCTCCACTCTATTTTTTCTTCTACTATATAATTATT
TTTAACTTTCGCACAATAATACTATTTGTGGAGAAAACGAGAGAAGGAGA
AATTTTTTTTTTTTTTTCCCCCCCCCACCCCCCCGGGGGTGTTTTTTTCA
TACATTTTTTCTCTTGTTTTTATTTGTGTTTCTCCCCCTATAAAAATAAT
AAAAAAAAATAATAGTTTGTGGGGGGGGGGGGCGGGAGCTTTTTACTTCC
TCCTCCTTGATCCTTATTATCTCTATTTTTGTTCTCACCTCTTTTTTCCA
CTGATTTTTTTCTTATTATTTATTTTCCTCCTTTTTTCTCCTCCTCTACT
CTTATTGTCTTTCCCTCTTCCTTGCGGTTATCATTTCTTATATATTACTC
CTCTTAACCCTCCCCTCCCCTCCTCCCGCGTATATTTTATATCTCTCTTT
CTTCCCCGTCTTACTCTTTTTATACTCTTCCTCTCGTTTATATCTATTCT
CCTCGCTCTCACTACTCTTCTCTTCCTATATTCTTATTTCTTCTGTTTTT
ATCTACCCTCTTATTTTTTTCTGTTTATGTGCGCACCTTTCTCGTTCACA
CGTNGTCTTTCTCTTCCTTTTCTCTACGTATTATTGTTGTGTTCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_f24.b1 MSMg01no095_f24.b1 CHROMAT_FILE:
MSMg01no095_f24.b1 PHD_FILE: MSMg01no095_f24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:22 2005
         (323 letters)



>mm_chr13_39498376_39499098
          Length = 723

 Score =  598 bits (309), Expect = e-175
 Identities = 312/313 (99%)
 Strand = Plus / Plus

                                                                       
Query: 11  gaattctaatcctcatccttgcctctgcatttgattcgttttacagtagcatgaattaag 70
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 211 gaattctaatcctcatcctttcctctgcatttgattcgttttacagtagcatgaattaag 270

                                                                       
Query: 71  atcaggactatgtgatgcattatatactatacactatagataggcatggtccataaagcc 130
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 atcaggactatgtgatgcattatatactatacactatagataggcatggtccataaagcc 330

                                                                       
Query: 131 tacaggcctctgaaaagtgtataacttggtagaaacttaagtaaatagaatattaatgat 190
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 tacaggcctctgaaaagtgtataacttggtagaaacttaagtaaatagaatattaatgat 390

                                                                       
Query: 191 aattaataacagtagaaggcattaaatgttcacattaaacatgctgtcaagagttaccag 250
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 aattaataacagtagaaggcattaaatgttcacattaaacatgctgtcaagagttaccag 450

                                                                       
Query: 251 attattgtagtttgttttaaaggccttagaaagccaatacctgactgaagcatagactct 310
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 attattgtagtttgttttaaaggccttagaaagccaatacctgactgaagcatagactct 510

                        
Query: 311 gggtcttttgtca 323
           |||||||||||||
Sbjct: 511 gggtcttttgtca 523


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)