Query= MSMg01no095_j09.b1 MSMg01no095_j09.b1 CHROMAT_FILE:
MSMg01no095_j09.b1 PHD_FILE: MSMg01no095_j09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:39 2005
(484 letters)
>mm_chr13_111257443_111258325
Length = 883
Score = 779 bits (403), Expect = 0.0
Identities = 462/487 (94%), Gaps = 10/487 (2%)
Strand = Plus / Plus
Query: 6 gaattctctgagttctctcattgtgttaaaacactaaagttttaagcattgtcagcattt 65
||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 206 gaattatctgagttttctcattgtgttaaaacactaaagttttaagcattgtcagcgttt 265
Query: 66 tgaatagatttacctttctacatttagtactttaaagaggctcttcagttttcttatcct 125
|||| ||||||||||| || ||||||||| |||||||| |||||||||||||||| ||||
Sbjct: 266 tgaacagatttaccttcctgcatttagtattttaaagaagctcttcagttttcttttcct 325
Query: 126 tgacacttggttggattaaggacatcaattcaaaatgggtttctatttcttaaattagga 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tgacacttggttggattaaggacatcaattcaaaatgggtttctatttcttaaattagga 385
Query: 186 aggtaatataggaattgggaaagaccgaaggggagatgactgagatgctggagaggctgg 245
||||||||| ||||||| |||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 386 aggtaatatgggaattgtgaaagaccgaaggggagatggttgagacgctggagaggctgg 445
Query: 246 gatcctacagagttctttctgcatctctccctacgcctcattctgtctcaagggggtttt 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gatcctacagagttctttctgcatctctccctacgcctcattctgtctcaagggggtttt 505
Query: 306 ggtggaagagttatttaacattcatcgaatttagacatcaaatcttaatgagcatggcac 365
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 ggtggaagagttatt-aacattcatcgaatttagacatcaaatcttaatgagcatggcac 564
Query: 366 aacatgatcattaattttataacatcgttttttattagactcccagatgcattggatttt 425
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 565 aacatgatcattaattttataacatcattttttattagactcccagatgcattggatttt 624
Query: 426 aagtagacaatttaaaaaactgtattttgttgttgttgttgtt---------tgcctaca 476
||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 625 aagtagacaatttaaaaaactgtattttgttgttgttgttgttgttgttgtttgcctaca 684
Query: 477 aagatga 483
|||||||
Sbjct: 685 aagatga 691
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 883
Length adjustment: 10
Effective length of query: 474
Effective length of database: 873
Effective search space: 413802
Effective search space used: 413802
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no095_j09.g1 MSMg01no095_j09.g1 CHROMAT_FILE:
MSMg01no095_j09.g1 PHD_FILE: MSMg01no095_j09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:39 2005
(216 letters)
>mm_chr13_111352221_111352836
Length = 616
Score = 406 bits (210), Expect = e-118
Identities = 213/214 (99%)
Strand = Plus / Minus
Query: 1 actacatcataggccaggctgttctcaagttcatggtcctccggtcttagcctctcatct 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 actacgtcataggccaggctgttctcaagttcatggtcctccggtcttagcctctcatct 355
Query: 61 ttagtagaagtatttcaatgtattgggaaatgaagaaaatagttagggtttaaactgagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 ttagtagaagtatttcaatgtattgggaaatgaagaaaatagttagggtttaaactgagc 295
Query: 121 attgaggctggaggaacacactggtcaaactagagagtctcagaaacaaccagactgtac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 attgaggctggaggaacacactggtcaaactagagagtctcagaaacaaccagactgtac 235
Query: 181 ccagcttataagatctgtgggggtgggggtgggg 214
||||||||||||||||||||||||||||||||||
Sbjct: 234 ccagcttataagatctgtgggggtgggggtgggg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 216
Length of database: 616
Length adjustment: 9
Effective length of query: 207
Effective length of database: 607
Effective search space: 125649
Effective search space used: 125649
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
