CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTACTGTGCACGTCTTTTTACAGCAAATACAGCTTCCCGAGTTTCTGA
GTTCTGTCATACACAGAAGAGACATTACTGAAAATCATTGAGCTGCTTCT
TGTAAAGTGTGCAACTGTGGTTTCAGGACTGAAACCCACTGGAGTAGAGG
TTCATTTAAATCAGAAAATATTAGAATACACAAGAAAGTTCCAAGTATCG
AAGTGCTTTTCTGTGAGGTTATACAAAAAGTAAACAATAGGAGGGCAGAG
GAGATCAATGTGTGGCGCTACCTACGTGCCATGCAGAGAATTCCAGTGAT
ATGTCTTTGATGCTTGGATGGCTTTCTCGGCTGTTTGAGGCATCTTTGTC
CCTACAAGTAATTCCATTTCATGCTCTTGAAATTAACTTAATAAACCCAC
TGGTTCTCCCATATAGTTTTTAGTAGAATTGTTTATTGGTTAGTTATTTG
TGCTCTACATGATATGAGTAGGTGTTTTGTTCATATAACCCCAGGAAAAA
TTACAAAATAGAAGGATAAGTGCAAATGAAACTAAGAGAATTGGCATTAG
GGTAAATCTGTGTTTCTTAAGAGTGGTAATGAACCTATACAACCAACATG
AATTCTTTGAGAAGAAATGAGTCCTTTGCTTAGTGGTTTGAGAAAAAATT
GTAAGCATTTCGGAAA

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGAGATAGTCTGTGTGAGGCCTTCCCC
TGCAGTACTTAGCCTCACAGCCCAAGCTGGTGCCCATACTGGATTTATTT
TGTCAAGAACCATGCATAGGTTTGAATCCTATGCAGCTCCTGAAGGAGTA
TTATCAACCTTAAGTCCAGCTAGGCCTTTGTCAGCCAAATCAAGTCTAGG
ATAATGAATTTGCAAAGGTCTCCATGCCATTGAATCAATCTGCTGTTTTA
TAAAACCAGTAATTCTGTTAAAAATAAAAGGCCCCCAAGTTACTAATAAT
AAAATGCTTATCATAGGTCCAAGAAGGGGCATCAAGAGAGTGAACATGGA
GGACTTCCACCAATTATCAGAAGCAGCTAGCTGAAAACTGTTTTTTCTGG
AGCTCCAAATTATGTTTATGTAACTGTTGGATACTACAATGTCTGACTCA
TTCTGAAAGAGACAGGTGCCACTTTTCTCAGCGGTCAGCAAATCAAGTGC
TCATTGATTCTGTAAGGCAACTTGGGCAAGGGAAGTTAATTGTCTCTGTA
NAANATCTAATGACTCATTGGAGGCTTCCACTGCCAACACAAGTTTTTGG
GATAATTTGGTGGTGGTAGAAGAGAATGGGTTAAAGCTCCTCCGGTCAAA
CTGGTACCCCCAATATAGA

Query= MSMg01no095_m11.b1 MSMg01no095_m11.b1 CHROMAT_FILE:
MSMg01no095_m11.b1 PHD_FILE: MSMg01no095_m11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:54 2005
         (572 letters)



>mm_chr13_88943482_88944450
          Length = 969

 Score =  847 bits (438), Expect = 0.0
 Identities = 486/504 (96%), Gaps = 6/504 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttactgtgcacgtctttttac-agcaaatacagcttcccgagtttctgagttct 63
           |||||||||||||||| |||||||||| |||||||||||||||| |||||||||||||||
Sbjct: 500 gaattcttactgtgcaggtctttttacaagcaaatacagcttcctgagtttctgagttct 441

                                                                       
Query: 64  gtcatacacagaagagacattactgaaaatcattgagctgcttcttgtaaagtgtgcaac 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gtcatacacagaagagacattactgaaaatcattgagctgcttcttgtaaagtgtgcaac 381

                                                                       
Query: 124 tgtggtttcaggactgaaacccactggagtagaggttcatttaaatcagaaaatattaga 183
           ||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tgtggtttcaggactgaa----actggagtagaggttcatttaaatcagaaaatattaga 325

                                                                       
Query: 184 atacacaagaaagttccaagtatcgaagtgcttttctgtgaggttatacaaaaagtaaac 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atacacaagaaagttccaagtatcgaagtgcttttctgtgaggttatacaaaaagtaaac 265

                                                                       
Query: 244 aataggagggcagaggagatcaatgtgtggcgctacctacgtgccatgcagagaattcca 303
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 264 aataggagggcagaggagatcaatgtgtggagctacctacgtgccatgcagagaattcca 205

                                                                       
Query: 304 gtgatatgtctttgatgcttggatggctttctcggctgtttgaggcatctttgtccctac 363
           |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 204 gtgatatgtccttgatgcttggatggctttctcagctgtttgaggcatctttgtccctac 145

                                                                       
Query: 364 aagtaattccatttcatgctcttgaaattaactt-aataaacccactggttctcccatat 422
           ||||||||||| |||||||||||||||||||||| ||||||| || |||||| |||||||
Sbjct: 144 aagtaattccagttcatgctcttgaaattaacttcaataaactcattggttcccccatat 85

                                                                       
Query: 423 agtttttagtagaattgtttattggttagttatttgtgctctacatgatatgagtaggtg 482
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 84  agtttttagtagaattgtttattggttagttatttgtgctctacatgatgtgagtaggtg 25

                                   
Query: 483 ttttgttcatataaccccaggaaa 506
           || || ||||||||||||||||||
Sbjct: 24  ttctgctcatataaccccaggaaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 969
Length adjustment: 10
Effective length of query: 562
Effective length of database: 959
Effective search space:   538958
Effective search space used:   538958
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)