BAC Information

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BAC

Clone NameMSMg01-095M17
Chromosome13 (Build37)
Map Location 33,077,501 - 33,077,904
singlet/doubletsinglet
Overlap genenone
Upstream geneGmds, Wrnip1, Serpinb1a, Serpinb1-ps1, Serpinb1c, Serpinb6b
Downstream geneSerpinb9, Serpinb9b, Serpinb1b, LOC628301, Serpinb9c, Serpinb9d, Serpinb9e, Serpinb9f, OTTMUSG00000000724, Serpinb9g, LOC100041370, EG619715, LOC382743, OTTMUSG00000000712, LOC193403, Vmn2r-ps94, OTTMUSG00000000720, Serpinb6c, Serpinb6a, Nqo2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095M17.T7 (MSMg01no095_m17.b1)MSMg01-095M17.TJ (MSMg01no095_m17.g1)
ACCAG312624AG312625
length718720
length of high quality
(start - end)
437 (44 - 480)581 (74 - 654)
definitionCHROMAT_FILE: MSMg01no095_m17.b1 PHD_FILE: MSMg01no095_m17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:55 2005CHROMAT_FILE: MSMg01no095_m17.g1 PHD_FILE: MSMg01no095_m17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTTTATATTTCACAGCCACTTATCATCTTTGGATTCAGGTTCCGTTG
GCACACCTGTGGATCTCTAGTCGCATTCCACAAGGAGCTTCATTCCTACA
GTGTCAGGTGCAAGCACTCTTTTAATATAGAGTGCTTCCTTAATCAAAGG
AAGTCATTTTCCTTGTTTATGTTTCTCAATGGTCCAGTGTACCCTCTAAT
TATGAATACATCCTGAGCCTGATACTAAAGTTTTATACCACTGCCTGCCA
ACCTGATGTGACTGGTTATTGGCTAATGCTATCTTTCTTTCTTTGCTCCT
TCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTACTTCCTTCCTTCCTTC
CTTCCTTCCTTCCTTCCTCCCCTCCCTCCCTCTCTCCCTCCTTTGTTCAC
CCCCCCTCTCTCTTAGATAAAGAAAGGATATTGAGAAGAAAAGAAGGGAG
ATATAGAAATATCATATAGGAATACATATAGAAATAAAGGATACATTATT
GAATATACTCTTGAACTTAGAACTATAGCTAATCTGAAATAAAGTTATTT
TGTTTACATTGATATGGATTATTGCATTTGATACAGGTTTTCCATTTTCA
TCGGTAAAAATCTTTGTGTATTAATACTAACTTTAACGCCAAGTTTGTTA
ACAAAAAATGCATGCATT
GAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACTTAAGGGCTGAG
AACCAGTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAAT
CAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGGTCA
AAAATTCAGATGACAGCAGATGCTGGTGAGGATGTGGAGAAAGAGGAACA
CTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATC
AGTCTGGTGGTTCCTCAGAAAATTGGACATAGTACTACTCAAAGATCCAG
CAATACTTCTTCTGTTATATACCCACACCATGTTTTAACTGGTAATAAGG
AAACATGCTCCACTATATTCATAGCAGCCTTATTTATAATGGCCAGAAGC
TGGAAAGATCCCAGATGTCCCTCAACAGAGGAACGGATACAGAAAATGTG
GTACATTCACACAATGGAGTACTACCCAGCTATTATAAACAATGAATTTA
TGAAATTCTTACTCAAGTGGATGTATCTGGAGGATATCATCCTGAGTGAG
GTAACCCAATCACAAAAGAACTGACTTGATATGCATTCACTGGTAAGTGA
ATATTAGCCCAGAAACTTAGAATACCCAAGATACAATTTGCTAAACACAA
GAAAATTCGGGAAGAAGGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_m17.b1 MSMg01no095_m17.b1 CHROMAT_FILE:
MSMg01no095_m17.b1 PHD_FILE: MSMg01no095_m17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:55 2005
         (437 letters)



>mm_chr13_33077297_33078133
          Length = 837

 Score =  690 bits (357), Expect = 0.0
 Identities = 400/431 (92%), Gaps = 27/431 (6%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctttatatttcacagccacttatcatctttggattcaggttccgttggcacacc 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctttatattttacagccacttatcatctttggattcaggttccgttggcacacc 264

                                                                       
Query: 65  tgtggatctctagtcgcattccacaaggagcttcattcctacagtgtcaggtgcaagcac 124
           |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 265 tgtggatctctagttgcattccacaaggagtttcattcctacagtgtcaggtgcaagcac 324

                                                                       
Query: 125 tcttttaatatagagtgcttccttaatcaaaggaagtcattttccttgtttatgtttctc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcttttaatatagagtgcttccttaatcaaaggaagtcattttccttgtttatgtttctc 384

                                                                       
Query: 185 aatggtccagtgtaccctctaattatgaatacatcctgagcctgatactaaagttttata 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aatggtccagtgtaccctctaattatgaatacatcctgagcctgatactaaagttttata 444

                                                                       
Query: 245 ccactgcctgccaacctgatgtgactggttattggctaatgctatctttctttctttgct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||          
Sbjct: 445 ccactgcctgccaacctgatgtgactggttattggctaatgctatctttc---------- 494

                                                                       
Query: 305 ccttccttccttccttccttccttccttccttccttacttccttccttccttccttcctt 364
            |||||||||||||||||||||||||||||||||||                ||||||||
Sbjct: 495 -cttccttccttccttccttccttccttccttcctt----------------ccttcctt 537

                                                                       
Query: 365 ccttccttcctcccctccctccctctctccctcctttgttcaccccccctctctcttaga 424
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 538 ccttccttcctcccctccctccctctctccctcctttgttcatcccccctctctcttaga 597

                      
Query: 425 taaagaaagga 435
           |||||||||||
Sbjct: 598 taaagaaagga 608


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 20
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 837
Length adjustment: 9
Effective length of query: 428
Effective length of database: 828
Effective search space:   354384
Effective search space used:   354384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)