BAC Information

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BAC

Clone NameMSMg01-095N01
Chromosome13 (Build37)
Map Location 21,053,498 - 21,054,145
singlet/doubletsinglet
Overlap geneAoah
Upstream geneLOC432730, Elmo1, LOC100040226, LOC665381, LOC665386
Downstream geneOlfr1370, Olfr1369-ps1, Olfr42, Olfr1368, Trim27, Gpx5, LOC625752, Gpx6, Olfr1367, Zfp96, LOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302, LOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622, LOC665634, Zfp184
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095N01.T7 (MSMg01no095_n01.b1)MSMg01-095N01.TJ (MSMg01no095_n01.g1)
ACCAG312640AG312641
length709707
length of high quality
(start - end)		653 (44 - 696)630 (73 - 702)
definitionCHROMAT_FILE: MSMg01no095_n01.b1 PHD_FILE: MSMg01no095_n01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:57 2005CHROMAT_FILE: MSMg01no095_n01.g1 PHD_FILE: MSMg01no095_n01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTCGATTTTC
TGAAGTCCACCATCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTA
TCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTT
TGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTA
GGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGCTCTG
TTCAGGAATTTTTCCCCAATTTTGATTTACAAAAAGTTACTGAGAGTAAA
GAATGAAAGTCCCCCTTTATGTGTGAATTCACATGAAGAATTTTACCTCT
TCCCAGAAGAAAGGGCTGAGATCAGTGTAATGCAATTTCATCCAGTGCTT
CCTAGGTATTCCCTTGGTGACATTTGTAGTTAATTAAGTAGGTGTGTTGT
TACAATTTCTCCATAAATAATGTGTTGTATATAATATACTGAACGTTGTG
TTTTATTTTAGCAATACATCAAACCTCCTTGATCTTTTCTAATGTACATA
GCGTTTCAGAGTAAGGTTCCTTTCTCTTGTGGACATTCAGGCTATCTTCA
AAGTTTCTTTATCCTCAATAATACTGCAATGAACATCCTGTGCTGCCATC
TTACAAATG

GAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACAATCTGCAAAAGCCCGCAGTGCCCAG
GAACTTTTTAGCTTGTTTTGCACTGGTCGGTGGAGGAATATGAAACACAG
TCTCTTTTTCTAGCTGCTTCAACAGGTAGGCCACCGGACTCTTCTAAGGA
CTCAGCTTCTGTATTAGCACCCCTTTTGTTATCTCTTAAACACATTGATC
TTCAGCCAAAAGCTTTCGTTTGTTGCCAGGTACTAAGTTTTCTAATTTCC
CTGACTTTTGTGACCAGCATTTTATTTTTCTTATTTTTTTGTCTCACAGC
ACAGCTCTGATTCTGACTCTGATCTCTGTCTTTGTCTTAACTTCCTGTTA
CCTTGGTCAGATTGTTGGGACTTTCTAGTCCCACAGAGACGAGACCCCCA
TCAGAGCCTGGCAGTTAGACTCACAGGTGCTCCTTACCTTGGACAGAAGC
CCCAAGTGGGCGGATGCCTCCCTCACTGGAACTTGGAACAGACTCACTGC
CAGCAGCTCAGGGTGGTGCCACCTTCTGAGATGAGGGAACTTTAGAGCAG
AGACGGGAGTGCAGCTCTCACAGCTGGCTGCAACCGGCACTTATCTTAAA
GTGAAAGCAGTTTTTCTGTTAACAAGAGACGGGATGGGAGGGACAGGGGA
ATGAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_n01.b1 MSMg01no095_n01.b1 CHROMAT_FILE:
MSMg01no095_n01.b1 PHD_FILE: MSMg01no095_n01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:57 2005
         (653 letters)



>mm_chr13_21053293_21054345
          Length = 1053

 Score = 1208 bits (625), Expect = 0.0
 Identities = 643/649 (99%), Gaps = 1/649 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttgttcagttctgagccccattttttaatggggttattcgattttctgaagtc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattctttgttcagttctgagccccattttttaatggggttattcgattttctgaagtc 265

                                                                       
Query: 65  caccatcttgagttctttatatatgttggatattagtcccctatctgatttaggataggt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 caccatcttgagttctttatatatgttggatattagtcccctatctgatttaggataggt 325

                                                                       
Query: 125 aaagatcctttcccaatctgttggtggtctttttgtcttattgacggtgtcttttgcctt 184
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 326 aaagatcctttcccaatctgttggtggtctttt-gtcttattgacggtgtcttttgcctt 384

                                                                       
Query: 185 gcagaaactttggagtttcattaggtcccatttgtcaattctcgatcttacagcacaagc 244
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 385 gcagaaactttggagtttcattaggtcccatttatcaattctcgatcttacagcacaagc 444

                                                                       
Query: 245 cattgctgctctgttcaggaatttttccccaattttgatttacaaaaagttactgagagt 304
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cattgctgttctgttcaggaatttttccccaattttgatttacaaaaagttactgagagt 504

                                                                       
Query: 305 aaagaatgaaagtccccctttatgtgtgaattcacatgaagaattttacctcttcccaga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaagaatgaaagtccccctttatgtgtgaattcacatgaagaattttacctcttcccaga 564

                                                                       
Query: 365 agaaagggctgagatcagtgtaatgcaatttcatccagtgcttcctaggtattcccttgg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 565 agaaagggctgagatcagtgtaatgcaatttcatccagtgcttcctaggtattccctcgg 624

                                                                       
Query: 425 tgacatttgtagttaattaagtaggtgtgttgttacaatttctccataaataatgtgttg 484
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttacatttgtagttaattaagtaggtgtgttgttacaatttctccataaataatgtgttg 684

                                                                       
Query: 485 tatataatatactgaacgttgtgttttattttagcaatacatcaaacctccttgatcttt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tatataatatactgaacgttgtgttttattttagcaatacatcaaacctccttgatcttt 744

                                                                       
Query: 545 tctaatgtacatagcgtttcagagtaaggttcctttctcttgtggacattcaggctatct 604
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 745 tctaatgtacatagcgtttcagagtaaggttcctttctcttgtggacattcaggttatct 804

                                                            
Query: 605 tcaaagtttctttatcctcaataatactgcaatgaacatcctgtgctgc 653
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tcaaagtttctttatcctcaataatactgcaatgaacatcctgtgctgc 853


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space:   670649
Effective search space used:   670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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