Query= MSMg01no095_o11.b1 MSMg01no095_o11.b1 CHROMAT_FILE:
MSMg01no095_o11.b1 PHD_FILE: MSMg01no095_o11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:04 2005
(676 letters)
>mm_chr13_10454602_10455679
Length = 1078
Score = 1247 bits (645), Expect = 0.0
Identities = 667/677 (98%), Gaps = 8/677 (1%)
Strand = Plus / Minus
Query: 5 gaattctaagccaatgagaaagactatcaaataattaataataataatgatgatgatgat 64
|||||||||||||||||||||||||||||||||||||||||||||||| | || |||||
Sbjct: 874 gaattctaagccaatgagaaagactatcaaataattaataataataat-a--ataatgat 818
Query: 65 gatgatgatgatgtataaaaagcaagatgcaaagaacagaagaaaaatcaaggtggatat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 gatgatgatgatgtataaaaagcaagatgcaaagaacagaagaaaaatcaaggtggatat 758
Query: 125 aaaaacgaggaataccatacaaagctgacctttgttttccacatattcatatatttgcac 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 aaaaacgaggaataccatacaaagctgacctttgttttccacatattcatatatttgcac 698
Query: 185 acaaataaaataattagcacaaaaaataatgagtattgcttcaatccagaaatattgtga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 acaaataaaataattagcacaaaaaataatgagtattgcttcaatccagaaatattgtga 638
Query: 245 gttaatattgaattctcatctcagatgacaaagctatgaagaatgaatatcactgagcat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 gttaatattgaattctcatctcagatgacaaagctatgaagaatgaatatcactgagcat 578
Query: 305 ggttaaattgaagacaaat--acataaataaatcatatagttctataaccaaaccacaaa 362
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 577 ggttaaattgaagacaaatacacataaataaatcatatagttctataaccaaaccacaaa 518
Query: 363 ttgatttaggttttgttcaccatcaatcaaacagaacaagtgaaaatataatgactccat 422
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 ttgatttaggctttgttcaccatcaatcaaacagaacaagtgaaaatataatgactccat 458
Query: 423 taaatctatatgcatgtgcttggatcttcagtaataagatatttaataaatgtatacggt 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 taaatctatatgcatgtgcttggatcttcagtaataagatatttaataaatgtatacggt 398
Query: 483 tgctaattaacaacagaaagccaagcccagtttacatcaaagaaactcaacactggattg 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 tgctaattaacaacagaaagccaagcccagtttacatcaaagaaactcaacactggattg 338
Query: 543 ataccagtagtttaaaaataaaatgtgtttaatgttatagggtatttatcttttggctca 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 ataccagtagtttaaaaataaaatgtgtttaatgttatagggtatttatcttttggctca 278
Query: 603 gttgttgttgttgttg---ctgttgttgtgaaaattcatttgtatttttatttgtgtgtc 659
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 gttgttgttgttgttgttgctgttgttgtgaaaattcatttgtatttttatttgtgtgtc 218
Query: 660 tgcggatatgcccatgt 676
|||||||||||||||||
Sbjct: 217 tgcggatatgcccatgt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 6
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1078
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1068
Effective search space: 711288
Effective search space used: 711288
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no095_o11.g1 MSMg01no095_o11.g1 CHROMAT_FILE:
MSMg01no095_o11.g1 PHD_FILE: MSMg01no095_o11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:04 2005
(622 letters)
>mm_chr13_10320890_10321911
Length = 1022
Score = 1168 bits (604), Expect = 0.0
Identities = 617/622 (99%), Gaps = 2/622 (0%)
Strand = Plus / Plus
Query: 1 ctaagttagctatagaaccatattagtactgagacaggtaaggagctcatctgggttggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ctaagttagctatagaaccatattagtactgagacaggtaaggagctcatctgggttggt 262
Query: 61 aaagtatttgctttgggaagacaggacctgagataaatgtctagaacactctcgcacaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 aaagtatttgctttgggaagacaggacctgagataaatgtctagaacactctcgcacaca 322
Query: 121 cctatatggcctgcatgtttataatcccaggactgggaaagtaggtgcaagtgaatccct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 cctatatggcctgcatgtttataatcccaggactgggaaagtaggtgcaagtgaatccct 382
Query: 181 agggattcctcgacaaacagcctgcctaaacagcaagttccagaacactgacagacactg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 agggattcctcgacaaacagcctgcctaaacagcaagttccagaacactgacagacactg 442
Query: 241 tcttaataaaaaaagggaagtgatggctgaggaaccaaatgcaacgttaatctctagctt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tcttaataaaaaaagggaagtgatggctgaggaaccaaatgcaacgttaatctctagctt 502
Query: 301 aacatacatgcacacacacatagacacacagagagatgggcagcaggacagagagaggac 360
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 503 aacatacatgcacacacaca--gacacacagagagatgggcagcaggacagagagaggac 560
Query: 361 agagacttagaggcagagatagacagttacagagagacaaagacagagagaaagagagat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agagacttagaggcagagatagacagttacagagagacaaagacagagagaaagagagat 620
Query: 421 agagggacagaaatctatcagtgctgagaaatggtactcagaaaatcaattgtttcctta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agagggacagaaatctatcagtgctgagaaatggtactcagaaaatcaattgtttcctta 680
Query: 481 gaccacataattcctcaacaaccataggccttatttacaaaggattcatatgttcaaatg 540
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 681 gaccacataattcctcaacaaccataggccttgtttacaaaggattcatatgttcaaatg 740
Query: 541 ataaaacagatcttttgaagtgtttataggttatgaaagtgtataagccttccaagtgtg 600
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 741 ataaaacagatcttttgaagtgtttatagattatgaaagtgtataagccttccaagtgtg 800
Query: 601 atacatagattctatcaagttc 622
||||| ||||||||||||||||
Sbjct: 801 atacaaagattctatcaagttc 822
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1022
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1012
Effective search space: 619344
Effective search space used: 619344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
