BAC Information

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BAC

Clone NameMSMg01-096B16
Chromosome13 (Build37)
Map Location 25,501,498 - 25,501,788
singlet/doubletsinglet
Overlap genenone
Upstream geneCmah, 5830431A10Rik, 6330500D04Rik, LOC666145, Gmnn, LOC100040800, BC005537, Them2, Ttrap, D130043K22Rik, Aldh5a1, Gpld1, Mrs2l, LOC675430, Dcdc2a, Nrsn1
Downstream geneTpi-rs8, LOC214973, LOC666221
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-096B16.T7 (MSMg01no096_b16.b1)MSMg01-096B16.TJ (MSMg01no096_b16.g1)
ACCAG312860AG312861
length844735
length of high quality
(start - end)
---294 (75 - 368)
definitionCHROMAT_FILE: MSMg01no096_b16.b1 PHD_FILE: MSMg01no096_b16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:20 2005CHROMAT_FILE: MSMg01no096_b16.g1 PHD_FILE: MSMg01no096_b16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTCTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCC
GCGGAATTCTTTGTTTTTCTCTGAATTTGACTTTCTGAAGCCCATCTTCT
TGACCTCTTTGTATACATTGGCATATTAGTCCCCTATCCGACTTAGGATT
GGTAAAGATCCTCTCCCAATCTGTTGGTGGCTTTTTTGTCTTATTGACAG
CGCCTTTCGCCCCACAGAAGCTCTGCCATTTCATGCACTCCTATTTGCCC
CTTCTCTATCTTACAGCACCAGCCACTGCCTGTTCTGTTCCGTGATATCC
TCCCCCCGTGCGTCTATCCTTCACGCCNTTTCCCTCTCCTTTTTTCCTCT
ATATGCCCCCTTTGTTTCTCCGCTTTTATCCGCTGTCTTCCCGTCCCCCC
CTTCACTCCTCCCCCCTTTTTTCATTCTTTACTCCAACCGCCCCTATTTC
TACGTTCTTCCCTCCTTCGCCTACTCTGCCTCTTCTGTCCCCCGCATCTA
CTCTCGTTTCTACATGCCCGCTTTTCTTTCCTTCCCTCATCGCTCTTATT
CTCCCCTTTTTTCTGTCCTCTCGCGCTTTCCCTTCCTCCGCTGCTCCTTC
TTTTCTTCCCCTTCCCCCCTTATATTTCGCCTTCTTCCCCTCCCTTTTTC
CTACCTGTTCCTTTTTTTCCTTTCCTTTCCGCCATCTTCCTCTTCCTCCC
ACCGTCTCGTATCTCTCTCCCCCCTTTCTCTCCCGCCTTTTCTCCGCCCA
TGCCTTTCCCTATTCTCCCCGTTTCCCGCTTTTTTCCTACCCCTCAATCC
TCCTCTCTTCTCTTTTCCCTTATTCTCTTCTCATCTCTTCTCGC
ACTATACAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTTGCTAGAACCGCTGGAAATCGTAA
CCTCAGCAACATTTTTATGAGATGGAGGCTCTGTGGTCCTTCCTCCATGC
TTCATGAACACACAGTAAGGTAAGGTGGGGCTCTTCCTAAGCATTAAGGC
ATCACAAAATGAAGATGAGCACAGAAGATGCACATAAATAGTGGGCTTTC
TGTTCCAACAAAGGGAACCACTACTAGGAAATATCTCTATAAGGAAAGAA
GAAAGGTGAAACTAGTGTTAAGAACAATAAATCAAATGCATCCCTGATGA
ACAACTATTATTTGGTGAGAAAGGCACTGTTACATTTCAAATGAGTTTCT
ATACTTCTGTATAACTACCTTTCTATGTCTATGACTGAATCAATATTCAA
TGAATCAATATAGCACAAATCAGTCCTGCAGATTTTAAGTGGAACCCACT
CTCCCTTTTAGCTTCAGACAGCTTCAGAATCCACAACTGTGATCTAGTTG
GGAAGTGGACTGTGCTCCTAACCGATAAGTTTGCTTTCACCAAGTTCCTT
TTTTTTATTATCAGGTTTCCACCTCTGATTCATCACAGCCCCATACTCCA
GACTTCTTCCCCAATACACCCGCTGAAATGTAAAACCACCCCCTGTACAC
CGAAACGCTAACATAATCCGAGACGACCCACTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no096_b16.g1 MSMg01no096_b16.g1 CHROMAT_FILE:
MSMg01no096_b16.g1 PHD_FILE: MSMg01no096_b16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:20 2005
         (294 letters)



>mm_chr13_25501298_25501991
          Length = 694

 Score =  547 bits (283), Expect = e-160
 Identities = 289/291 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttgctagaaccgctggaaatcgtaacctcagcaacatttttatgagatggaggctctgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 cttgctagaaccgctggaaatcgtaacctcagcaacatttttatgagatggaggctctgt 432

                                                                       
Query: 61  ggtccttcctccatgcttcatgaacacacagtaaggtaaggtggggctcttcctaagcat 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 431 ggtccttcctccatgcttcatgaacacacagtaaggtaaggtggggctcttcctaatcat 372

                                                                       
Query: 121 taaggcatcacaaaatgaagatgagcacagaagatgcacataaatagtgggctttctgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 taaggcatcacaaaatgaagatgagcacagaagatgcacataaatagtgggctttctgtt 312

                                                                       
Query: 181 ccaacaaagggaaccactactaggaaatatctctataaggaaagaagaaaggtgaaacta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ccaacaaagggaaccactactaggaaatatctctataaggaaagaagaaaggtgaaacta 252

                                                              
Query: 241 gtgttaagaacaataaatcaaatgcatccctgatgaacaactattatttgg 291
           ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 251 gtgttaagaacaataaatcaaatgcgtccctgatgaacaactattatttgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)