BAC Information

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BAC

Clone NameMSMg01-096F09
Chromosome13 (Build37)
Map Location 88,940,053 - 88,940,302
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667230, EG435375
Downstream geneEdil3, Hapln1, EG667266, Vcan, LOC100042940
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-096F09.T7 (MSMg01no096_f09.b1)MSMg01-096F09.TJ (MSMg01no096_f09.g1)
ACCAG313037AG313038
length785783
length of high quality
(start - end)
250 (135 - 384)42 (225 - 266)
definitionCHROMAT_FILE: MSMg01no096_f09.b1 PHD_FILE: MSMg01no096_f09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:39 2005CHROMAT_FILE: MSMg01no096_f09.g1 PHD_FILE: MSMg01no096_f09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTTTTTTTTTTTTTTTTTTTTTNTTCTTCTCCCCCCCCCCCNCCCTC
TTCCGNCGNGGCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCA
GAGAATGCGCGGAATTCACTCTTGTTCTCGCGTACAAGGCTTGTTTACTA
GTTAAGCACAGCGGAGGCCCGCGCCATCTTATAATGCCGATTGCTCGCGG
CACACACGGCCCTCCTCAGAGATTACTGGCAGCACGCACGCGATTCCTCG
CAACACGTACTGGCTCTCCACACACATGGATAAAATATTACCACAATGGT
CAAATACTTAAGTATTACTTATAGAACAGACTATCTGTGGTTAGTACTGC
TAACAGAGAAGTCCTGATGCAAAATCTGTGTGTAGTTGAAAACATAGAGT
AGCAAATATTGAGATATTTAAATTGCTTCATATCTCCTACACCAAACTAT
TTTAAATTTATCATCAGTAAAATCTTGGCTCCGCACAGATATATGTGCTG
TAGATTTTTTTAACCCTAATCTGGGGTTTCTACCCTTCCTTTGACAATTT
ATTTCTAGCATAAAAGATACTACTTTTATTATTCACAATAAACCTTAATC
ATTATCTAGAGCTAGTCCGATATCATCCCTTCTATGCTATTATCATCCTA
TTTCTTACGAATAACCCCTGAGTTACCATTTCATATATTTCATCTGATCT
GCTCTTAACTCCCTTTATCTCTTCCTCACGGGCCAGCGATCTCTTGATTC
CTATCCCCTACTGTACATGCCTCTTTCTTCTCCTC
TCCTCTTTTTTNNTTTTTTTNNNNNNNNCCGTCGNGNCCNCGGGGGGAAA
AACCGATGATAGGGGTAGCCTGGGGGNCGNCTGGCTTTCCGGACCGCANG
ANNNANAGAAGGATTTCCCAAAGGAGGGGNNANGANNCNCANAAANNGNA
NAGAANNAGGAANAANANGGAAAACACCAAANANNNNNNAAGAGNNAGGG
GNCNNAGNCAGGGNNGCAAGGCCGGCACAAACANCAGGACCAAGAAGCAN
GAGGGGAGGAAAGGANANANNCAGCNCACACGGCCAAACGGCCGCNCANC
ACCAAAGGATGNGAGGACGGGAACNCAAGCAGGGCAGGAAGCAGGAGCGG
ACGCAGAGGCCACGGAGGGAAGTTTTTTTTTTTCANGCAACCCANGGCAG
GCACAGCCAGCNCACTTATTGAACCCCGACTACCAGCCCAGAGATGGCAA
CACCCACAAGGGGACCTCCCCCCTTGATCACTAATTGAGAAAATGCTTTA
GAGGTGGATCTCATGGGAGCATTTTTCCAAATGAAGATCCTTTTTCTGTG
ATAACTCCAGCCTGCGTTCAGTGGACGCAAGACTAGGCAGTACACTTATG
GTAGGGAGAACATTGCATTTGGAGATGGAGTTTCATTTTTTTGCTGGATG
TTACTAAATGTCTATGGGGTTGTATTGATACTAGAAGATGAGGTCGGGTA
TATTCTAGCGCATTTTTGTTTTTATGGATTTCACCTATACGTATCCTCAT
TGAGGGAGTTATCTTACTAGTGACCTTAGATCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no096_f09.b1 MSMg01no096_f09.b1 CHROMAT_FILE:
MSMg01no096_f09.b1 PHD_FILE: MSMg01no096_f09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:39 2005
         (250 letters)



>mm_chr13_88939715_88940364
          Length = 650

 Score =  429 bits (222), Expect = e-125
 Identities = 243/250 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaggcttgtttactagttaagcacagcggaggcccgcgccatcttataatgccgattgc 60
           |||||||||||||||||||| |||||||||||||| ||||||||||||||||  ||||||
Sbjct: 588 caaggcttgtttactagttaggcacagcggaggcctgcgccatcttataatggtgattgc 529

                                                                       
Query: 61  tcgcggcacacacggccctcctcagagattactggcagcacgcacgcgattcctcgcaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 tcgcggcacacacggccctcctcagagattactggcagcacgcacgcgattcctcgcaac 469

                                                                       
Query: 121 acgtactggctctccacacacatggataaaatattaccacaatggtcaaatacttaagta 180
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 acgtaccggctctccacacacatggataaaatattaccacaatggtcaaatacttaagta 409

                                                                       
Query: 181 ttacttatagaacagactatctgtggttagtactgctaacagagaagtcctgatgcaaaa 240
           |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 408 ttacttatagaagagactatctgtggttagtactgctaagagagaagtcctgatgcaaaa 349

                     
Query: 241 tctgtgtgta 250
           ||||||||||
Sbjct: 348 tctgtgtgta 339


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 650
Length adjustment: 9
Effective length of query: 241
Effective length of database: 641
Effective search space:   154481
Effective search space used:   154481
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)