MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-097C08
Chromosome	13 (Build37)
Map Location	41,632,222 - 41,632,513
singlet/doublet	singlet
Overlap gene	none
Upstream gene	LOC100039048, Tcfap2a, EG621629, EG637157, LOC100039105, Gcnt2, Pak1ip1, Tmem14c, Mak, EG621771, Gcm2, LOC637277, Elovl2, LOC268650, BC024659, Nedd9
Downstream gene	EG621976, EG328231, 9530008L14Rik, LOC100039272, Hivep1, Edn1, Hn1-ps4
Link	Open Mouse BAC browser

Click to get alignment info.

name	LOC100039048 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039048
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein

name	Tcfap2a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:21418 MGI:104671
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG621629 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:621629 MGI:3646756
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 24 ESTs, 8 Proteins

name	EG637157 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:637157 MGI:3647123
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 10 Proteins pseudo : _no_value

name	LOC100039105 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039105
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins pseudo : _no_value

name	Gcnt2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14538 MGI:1100870
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 3 mRNAs

name	Pak1ip1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68083 MGI:1915333
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tmem14c (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66154 MGI:1913404
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Mak (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17152 MGI:96913
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG621771 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:621771 MGI:3648602
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein

name	Gcm2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:107889 MGI:1861438
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC637277 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:637277
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 ESTs, 1 Protein

name	Elovl2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:54326 MGI:1858960
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC268650 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:268650
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins pseudo : _no_value

name	BC024659 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:108934 MGI:2652854
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 121 ESTs

name	Nedd9 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18003 MGI:97302
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG621976 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:621976 MGI:3647046
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 4 Proteins

name	EG328231 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:328231 MGI:3644232
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	9530008L14Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:109254 MGI:1924596
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100039272 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039272
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 57 Proteins

name	Hivep1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:110521 MGI:96100
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Edn1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13614 MGI:95283
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Hn1-ps4 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:606512
definition	note : hematological and neurological expressed 1 pseudogene 4 pseudo : _no_value

name	LOC100039048 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149264184 GeneID:100039048
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein product : similar to Ubtf protein transcript_id : XM_001472162.1

name	Tcfap2a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31981461 GeneID:21418 MGI:104671
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transcription factor AP-2, alpha transcript_id : NM_011547.2

name	EG621629 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149264183 GeneID:621629 MGI:3646756
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 24 ESTs, 8 Proteins product : predicted gene, EG621629 transcript_id : XM_886036.3

name	Gcnt2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:39995101 GeneID:14538 MGI:1100870
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : glucosaminyl (N-acetyl) transferase 2, I-branching enzyme transcript_id : NM_023887.3

name	Gcnt2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:39995099 GeneID:14538 MGI:1100870
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : glucosaminyl (N-acetyl) transferase 2, I-branching enzyme transcript_id : NM_008105.2

name	Gcnt2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:39995103 GeneID:14538 MGI:1100870
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : glucosaminyl (N-acetyl) transferase 2, I-branching enzyme transcript_id : NM_133219.1

name	Pak1ip1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:145046258 GeneID:68083 MGI:1915333
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : PAK1 interacting protein 1 transcript_id : NM_026550.2

name	Tmem14c (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803169 GeneID:66154 MGI:1913404
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transmembrane protein 14C transcript_id : NM_025387.2

name	Mak (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6678785 GeneID:17152 MGI:96913
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : male germ cell-associated kinase transcript_id : NM_008547.1

name	EG621771 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:82950518 GeneID:621771 MGI:3648602
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein product : predicted gene, EG621771 transcript_id : XM_896627.1

name	Gcm2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:113680508 GeneID:107889 MGI:1861438
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : glial cells missing homolog 2 (Drosophila) transcript_id : NM_008104.2

name	LOC637277 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149264186 GeneID:637277
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 ESTs, 1 Protein product : similar to 145 kDa nucleolar protein transcript_id : XM_001472337.1

name	Elovl2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:9507146 GeneID:54326 MGI:1858960
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 2 transcript_id : NM_019423.1

name	BC024659 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149264188 GeneID:108934 MGI:2652854
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 121 ESTs product : cDNA sequence BC024659 transcript_id : XM_001472442.1

name	Nedd9 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802926 GeneID:18003 MGI:97302
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : neural precursor cell expressed, developmentally down-regulated gene 9 transcript_id : NM_017464.3

name	EG621976 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94395052 GeneID:621976 MGI:3647046
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 4 Proteins product : predicted gene, EG621976 transcript_id : XM_886379.2

name	EG328231 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802768 GeneID:328231 MGI:3644232
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : predicted gene, EG328231 transcript_id : NM_177808.3

name	9530008L14Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142385926 GeneID:109254 MGI:1924596
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 9530008L14 gene transcript_id : NM_175417.3

name	LOC100039272 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149264190 GeneID:100039272
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 57 Proteins product : similar to CG2839-PA transcript_id : XM_001472592.1

name	Hivep1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:117938311 GeneID:110521 MGI:96100
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : human immunodeficiency virus type I enhancer binding protein 1 transcript_id : NM_007772.2

name	Edn1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31981794 GeneID:13614 MGI:95283
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : endothelin 1 transcript_id : NM_010104.2

name	LOC100039048 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149264185 GeneID:100039048
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001472212.1

name	Tcfap2a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31981462 CCDS:CCDS26467.1 GeneID:21418 MGI:104671
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0005667 - transcription factor complex [Evidence TAS] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0003700 - transcription factor activity [Evidence IDA] GO_process : GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IDA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : Ap-2 (a); AP-2 alpha product : transcription factor AP-2, alpha protein_id : NP_035677.2

name	EG621629 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82950513 GeneID:621629 MGI:3646756
definition	codon_start : 1 product : similar to Ubxd4 protein protein_id : XP_891129.1

name	Gcnt2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:39995102 GeneID:14538 MGI:1100870
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0008375 - acetylglucosaminyltransferase activity [Evidence IDA]; GO:0008109 - N-acetyllactosaminide beta-1,6-N-acetylglucosaminyltransferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA] codon_start : 1 note : isoform B is encoded by transcript variant 2; beta-1,6-N-acetylglucosaminyltransferase; glucosaminyltransferase, I-branching enzyme product : glucosaminyl (N-acetyl) transferase 2 isoform B protein_id : NP_076376.3

name	Gcnt2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:39995100 CCDS:CCDS26468.1 GeneID:14538 MGI:1100870
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0008375 - acetylglucosaminyltransferase activity [Evidence IDA]; GO:0008109 - N-acetyllactosaminide beta-1,6-N-acetylglucosaminyltransferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA] codon_start : 1 note : isoform A is encoded by transcript variant 1; beta-1,6-N-acetylglucosaminyltransferase; glucosaminyltransferase, I-branching enzyme product : glucosaminyl (N-acetyl) transferase 2 isoform A protein_id : NP_032131.2

name	Gcnt2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:39995104 CCDS:CCDS26469.1 GeneID:14538 MGI:1100870
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0008375 - acetylglucosaminyltransferase activity [Evidence IDA]; GO:0008109 - N-acetyllactosaminide beta-1,6-N-acetylglucosaminyltransferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA] codon_start : 1 note : isoform C is encoded by transcript variant 3; beta-1,6-N-acetylglucosaminyltransferase; glucosaminyltransferase, I-branching enzyme product : glucosaminyl (N-acetyl) transferase 2 isoform C protein_id : NP_573482.1

name	Pak1ip1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:145046259 GeneID:68083 MGI:1915333
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_process : GO:0009968 - negative regulation of signal transduction [Evidence IEA] codon_start : 1 note : p21-activated protein kinase-interacting protein 1; glycerophosphodiester phosphodiesterase domain containing 1 product : PAK/PLC-interacting protein 1 protein_id : NP_080826.2

name	Tmem14c (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13384766 CCDS:CCDS26470.1 GeneID:66154 MGI:1913404
definition	GO_component : GO:0016020 - membrane [Evidence IEA]; GO:0005739 - mitochondrion [Evidence IDA] GO_function : GO:0003674 - molecular_function [Evidence IEA] codon_start : 1 product : transmembrane protein 14C protein_id : NP_079663.1

name	Mak (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6678786 CCDS:CCDS26471.1 GeneID:17152 MGI:96913
definition	GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006468 - protein amino acid phosphorylation [Evidence IEA] codon_start : 1 exception : mismatches in translation product : male germ cell-associated kinase protein_id : NP_032573.1

name	EG621771 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82950519 GeneID:621771 MGI:3648602
definition	codon_start : 1 product : hypothetical protein protein_id : XP_901720.1

name	Gcm2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:113680509 CCDS:CCDS26472.1 GeneID:107889 MGI:1861438
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence TAS]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006874 - calcium ion homeostasis [Evidence TAS]; GO:0007275 - development [Evidence IEA]; GO:0009887 - organ morphogenesis [Evidence IMP]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : glial cells missing homolog 2 protein_id : NP_032130.2

name	LOC637277 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149264187 GeneID:637277
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001472387.1

name	Elovl2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9507147 GeneID:54326 MGI:1858960
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005792 - microsome [Evidence IDA] GO_function : GO:0016747 - transferase activity, transferring groups other than amino-acyl groups [Evidence IDA] GO_process : GO:0006633 - fatty acid biosynthesis [Evidence IEA]; GO:0008610 - lipid biosynthesis [Evidence IEA]; GO:0000038 - very-long-chain fatty acid metabolism [Evidence IDA] codon_start : 1 function : putatively involved in fatty acid elongation note : sequence similarity to Cig30 2 product : elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 2 protein_id : NP_062296.1

name	BC024659 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149264189 GeneID:108934 MGI:2652854
definition	codon_start : 1 product : hypothetical protein LOC108934 protein_id : XP_001472492.1

name	Nedd9 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31543318 GeneID:18003 MGI:97302
definition	GO_component : GO:0005856 - cytoskeleton [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0005515 - protein binding [Evidence IEA] GO_process : GO:0007155 - cell adhesion [Evidence IEA]; GO:0007049 - cell cycle [Evidence IEA]; GO:0051301 - cell division [Evidence IEA]; GO:0007067 - mitosis [Evidence IEA]; GO:0001558 - regulation of cell growth [Evidence IEA] codon_start : 1 product : neural precursor cell expressed, developmentally down-regulated gene 9 protein_id : NP_059492.2

name	EG621976 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94395053 GeneID:621976 MGI:3647046
definition	codon_start : 1 product : similar to Ac1258 protein_id : XP_891472.2

name	EG328231 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29244350 GeneID:328231 MGI:3644232
definition	codon_start : 1 exception : mismatches in translation product : hypothetical protein LOC328231 protein_id : NP_808476.1

name	9530008L14Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30425128 GeneID:109254 MGI:1924596
definition	GO_component : GO:0016020 - membrane [Evidence IEA] codon_start : 1 product : hypothetical protein LOC109254 protein_id : NP_780626.1

name	LOC100039272 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149264191 GeneID:100039272
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001472642.1

name	Hivep1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:117938312 GeneID:110521 MGI:96100
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0016564 - transcriptional repressor activity [Evidence IDA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0045892 - negative regulation of transcription, DNA-dependent [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : alphaA-CRYBP1; crystallin, alpha binding protein 1; HIV type I enhancer binding protein 1; human immunodeficiency virus type I enhancer-binding protein 1 product : human immunodeficiency virus type I enhancer binding protein 1 protein_id : NP_031798.2

name	Edn1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753720 CCDS:CCDS26474.1 GeneID:13614 MGI:95283
definition	GO_component : GO:0005576 - extracellular region [Evidence IEA]; GO:0005615 - extracellular space [Evidence IDA] GO_function : GO:0031707 - endothelin A receptor binding [Evidence IPI]; GO:0005515 - protein binding [Evidence IPI]; GO:0005102 - receptor binding [Evidence IDA] GO_process : GO:0008217 - blood pressure regulation [Evidence IMP]; GO:0048514 - blood vessel morphogenesis [Evidence IMP]; GO:0051216 - cartilage development [Evidence IMP]; GO:0030146 - diuresis [Evidence IMP] [Evidence IGI]; GO:0009953 - dorsal/ventral pattern formation [Evidence IMP]; GO:0051482 - elevation of cytosolic calcium ion concentration during G-protein signaling, coupled to IP3 second messenger (phospholipase C activating) [Evidence IDA]; GO:0001701 - embryonic development (sensu Mammalia) [Evidence IMP]; GO:0007589 - fluid secretion [Evidence IMP]; GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence TAS]; GO:0031583 - G-protein signaling, phospholipase D activating pathway [Evidence IDA]; GO:0015758 - glucose transport [Evidence IDA]; GO:0007507 - heart development [Evidence IMP]; GO:0042474 - middle ear morphogenesis [Evidence IMP]; GO:0030147 - natriuresis [Evidence IMP]; GO:0030818 - negative regulation of cAMP biosynthesis [Evidence IGI] [Evidence IDA]; GO:0014032 - neural crest cell development [Evidence IMP]; GO:0009405 - pathogenesis [Evidence IEA]; GO:0001569 - patterning of blood vessels [Evidence IMP]; GO:0008284 - positive regulation of cell proliferation [Evidence IDA]; GO:0045987 - positive regulation of smooth muscle contraction [Evidence IDA]; GO:0007205 - protein kinase C activation [Evidence IDA]; GO:0050880 - regulation of blood vessel size [Evidence IEA]; GO:0006885 - regulation of pH [Evidence IDA]; GO:0019229 - regulation of vasoconstriction [Evidence IEA]; GO:0007585 - respiratory gaseous exchange [Evidence IMP]; GO:0001666 - response to hypoxia [Evidence IMP]; GO:0043179 - rhythmic excitation [Evidence IMP]; GO:0001501 - skeletal development [Evidence IMP]; GO:0042310 - vasoconstriction [Evidence IEA] codon_start : 1 note : preproendothelin product : endothelin 1 protein_id : NP_034234.1

name	EG637157 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:637157
definition	number : 5 pseudo : _no_value

name	EG637157 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:637157
definition	number : 4 pseudo : _no_value

name	EG637157 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:637157
definition	number : 3 pseudo : _no_value

name	EG637157 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:637157
definition	number : 2 pseudo : _no_value

name	EG637157 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:637157
definition	number : 1 pseudo : _no_value

name	LOC100039105 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039105
definition	number : 1 pseudo : _no_value

name	LOC100039105 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039105
definition	number : 2 pseudo : _no_value

name	LOC100039105 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039105
definition	number : 3 pseudo : _no_value

name	LOC100039105 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039105
definition	number : 4 pseudo : _no_value

name	LOC100039105 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039105
definition	number : 5 pseudo : _no_value

name	LOC268650 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:268650
definition	number : 1 pseudo : _no_value

clone name	MSMg01-525P05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-486C08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-497H16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-534N24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-347G01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-118K09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-207N10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-315D20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-471N21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-148E03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-270L23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-357E13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-378A03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-056N24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-502N05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-217N21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-166D02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-163C11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-387D03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-164H16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-401K09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-326L03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-442B03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-381F17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-126N10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-455K16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-084J14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-491C01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-172A01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-456O19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-541G08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-522H17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-105I11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-315C18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-301I23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-269D15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-398C21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-463P18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-473K07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-383I12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-122B08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-188H06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-061F13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-383H09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-383O24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-102E12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-300H17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-078O22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-453D19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-536C11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-143O14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-179K18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-214I17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-237I03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-139B02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-456N07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-125D17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-512M05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-097C08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-448P02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-296K17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-296K17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-520P23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-361F15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-233J14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-487J15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-520L12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-128G13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-328N15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-304N19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-335D11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-456N19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-371J05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-352J18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-144N23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-436C10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-499B12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-436G04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-121N24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-453C03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-332C16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-319C21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-130B10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-454F14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-359B07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-179J13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-483N21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-101A11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-383H21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-371A17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-424P18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-167A05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-201H15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-448J23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-277P21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-118E11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-296D09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-108M10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-470E06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-418I19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-478J24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-185P13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-325K03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-130K21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-073B19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-178F19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-113K20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-114I08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-104B13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-136H18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-217A13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-349O17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-113H11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-096K15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-343J15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-193H14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-061J11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-158D05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-182A14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-089H04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-143L23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-317D14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-236B23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-320N21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-140P11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-163O24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-304K01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-176J12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-176L06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-346D16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-165F02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-060P12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-029D02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-100K12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-024I14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-225K06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-215C10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-237N02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-173C19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-314E22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-220I13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-313M04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-247H01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-106C06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-072L06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-331J14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-159E01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-023N04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-079M04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-167H18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-016E19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-275D19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-069F18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-042A20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-208J19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-251D10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-062B23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-258G13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-077D01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-217I12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-102F05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-131G15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-083L15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-170F07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-183H07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-139I11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-004B10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-262N24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-262E10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-114N10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-080I17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-329L03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-014O24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-025L19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-036G16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-198H01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-283M02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-178M20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-062I07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-001J11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-317I23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-194E03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-073B03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-261J10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-256O20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-046A18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-191J08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-046D17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-064M24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-008G14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-298L16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-247P19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-226I02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-130M21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-261H03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-018K06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-291O24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-176E09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-019O05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-236L09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-201C12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-239C13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-323J09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-315G20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-349M11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-249H10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-190O16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-225M03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-225D13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-112I10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-233D19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-300N18
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-097C08.T7 (MSMg01no097_c08.b1)	MSMg01-097C08.TJ (MSMg01no097_c08.g1)
ACC	AG313652	AG313653
length	1,053	695
length of high quality (start - end)	---	291 (44 - 334)
definition	CHROMAT_FILE: MSMg01no097_c08.b1 PHD_FILE: MSMg01no097_c08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:47 2005	CHROMAT_FILE: MSMg01no097_c08.g1 PHD_FILE: MSMg01no097_c08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:47 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	CCCCCCCCACCCCCCNNCNNNNNACNNCCCNNNNNNCNANNNCGGGCATC CTNNTTACCCCACCAATCATTCTAACAAAGTGCGCCAGTTTCATCCCTAG TCCCTTCGCGTGTTCAGAGACGANGATATTTACCCTATTATTATTCTCCT CTACCGTCCTGCTCAACCTAGTCAAAAATGGCAAATATAGTCCGGCACGG GCGCGGANAGAAAAAGTAACGCCAAGGCGCACTCAACTCACATCGAACTA ACAACAACACGTACACACAGCCTATTTTTAATCAAAGCTATATTGCGTTG CCACCCCTTGTTCCTCTAACCGCCCCGCTTCCATAACGCGCCCACTCGTC GTCTACATACTTAATATGTTGGCCCGTTTCGGCCACATCACAACCTGGTA TGTTATTTCAGCCACGACACGTGTTCGTACCCGCCTCACCCACCACAACA TATCCGATCACTCCCGGGGCCGTGTGTTATGACATCCTCTCCCCCCTGTT AACCCATATAATTCGCATGATTCGTGAAGTACATTTCATGTATACCCACA GCAGTTTCGAACATTTTCTTTCGACTCCGAAACCAACGCCGACCATAAGA AATGGATATTAATCTCAATAAAATGTACAAACAGTAAGCGACGAGAGAAA CGGATGGCGAGATAAGTATAAACTCTATGACAACGGGGAGAAGAAAAATG TAATGGGGTGTGTAACCCAACCGCTGGTGCGATTAGCCGGTTGATATAGA TCTACAACAATGGGGATCGCCGAATAAAAATACTTCGCTGCGCCGCGCGG CAGCCATAAATACTAACCACAAATTGGGTTAGCGGGGATGTATCACCCAA CCACTTGCACTGTGGTTCATTGTGGAAGACGCGGAGATAATACCAGACGA CTGAGCGGGATCGGATTAGTTCAACCTATCTCGCTGTCTGCTTGCGCACC GCTGGATTTATATCCCGCATACTCTACGCGCNGCGGAAACGTGGCAAGCG GACGAGAATTGCAGGCGAGGGGCGAATAACTAAGCGCGGGTCACACGCGG GCG	GCCTGGCTTCAAATAAAGGTGAACTATAGAAGATTTCTGAAATTCTTTTC TCCTACCAAGTTGGTGTTCCTAATAATTTTTTTTTTAGGAAACTAACATT TATAATAAAGAGTGGACTGTTAAAATTGGCAAATTTTGCTTTGTAATATC AATGAGTTTATCAACTATATTACACATTAATAAATGACAGAAAACCTCTG ATGTTTTTTGGGGAATTTTGACCAGCCAGATATTCATGAAGGGAGAGAAA TGATTCTGAGAAAACCAAATTTCCTCTAGACATTTTTTTTTCATATTCTG GCAACTCATTTGCAATGTGATAAAATGCACACAAAAAAATAATGTGTTGG TCCCTGGACTCAGAAGAGACTTAATCGATGGATATACTAGAACTGATTTT GCTGCTTTAAGTACAACGTCTGAGGGATGTAACACTGAGGCGTTAACGAG GAACAGGTAGGATTAACAATGTATTCTGGCACTGGAGAGAATGCTCAGCA GTTAAAAGTACTAACTGCTCTTCCAGAGGTCCTGAGCTCAACTCCTAACA ACCACATGGTCGACTCACACCCTTCTGAAATGGGTATTTGATCGCCCTCT TCTGGTGAGTCCTGAAGACACTTCCGGGGCATTCCTATACTTAAGATGAA TAAACCCTAATAAAAAAAGTATTCCTGTGAGAGTCCTGTCAAATC
quality values	Open. Hide. 9 9 9 9 24 21 19 10 10 9 15 15 11 17 3 0 0 3 0 0 0 0 0 3 3 0 0 3 17 3 0 0 0 0 0 0 3 0 3 0 0 0 3 6 7 6 6 6 6 6 8 3 0 0 3 6 6 8 8 15 7 9 10 12 13 10 10 6 6 6 8 8 9 9 9 8 8 8 10 8 8 8 10 11 11 11 11 12 12 6 7 6 6 6 6 7 8 8 6 10 10 11 8 6 6 8 6 11 13 8 8 6 6 6 6 6 6 8 8 8 7 8 3 0 3 8 6 7 7 10 8 9 6 6 6 6 8 8 6 6 6 10 10 8 8 8 10 11 11 9 9 9 9 8 8 6 6 6 8 6 6 8 6 8 8 8 8 8 8 10 9 10 10 12 10 10 10 10 9 8 8 8 8 8 8 6 6 7 7 6 6 6 6 6 8 6 9 9 9 9 10 11 10 10 9 11 3 0 3 7 8 8 8 9 8 9 8 8 8 8 8 8 8 8 6 6 6 7 8 6 8 8 8 8 10 8 8 8 8 8 8 8 10 8 10 8 8 10 8 8 6 6 6 6 8 12 8 8 6 6 8 8 10 8 8 8 10 10 8 8 8 8 6 6 6 11 10 10 8 8 8 8 11 10 10 10 10 10 9 10 11 12 11 11 10 10 8 8 6 6 8 8 8 8 8 8 8 7 6 6 6 8 8 8 10 8 8 8 9 10 11 10 10 7 10 6 6 8 8 8 8 8 8 8 9 10 10 11 12 12 11 13 11 11 11 10 8 8 8 8 8 8 10 10 11 6 6 6 6 8 8 8 8 8 7 7 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 10 8 8 7 6 8 6 6 8 8 8 8 8 10 8 10 12 10 10 8 8 8 11 12 9 8 8 8 8 10 10 10 10 11 7 6 8 6 8 8 8 8 8 6 7 10 8 8 8 8 9 9 8 10 9 9 9 10 18 18 11 11 10 10 9 9 6 6 6 6 8 8 8 8 6 6 6 6 6 8 9 9 11 11 12 11 8 8 8 8 8 8 8 8 8 8 8 10 8 8 8 8 8 8 8 9 10 13 13 8 8 6 6 8 8 8 8 8 8 8 10 10 10 10 10 10 10 6 6 6 8 10 9 10 10 10 9 9 9 9 9 9 9 9 10 10 10 10 12 11 10 6 6 6 8 6 8 8 8 8 8 8 8 9 10 8 8 8 8 8 10 8 6 6 8 8 8 8 8 8 8 9 8 8 6 8 6 6 8 8 10 10 10 8 8 6 6 6 7 8 7 7 8 8 8 8 8 8 8 8 8 8 7 7 8 10 9 9 9 9 9 9 8 8 8 8 8 8 10 9 8 8 10 8 10 11 11 10 10 10 9 9 9 11 9 12 11 11 11 12 8 8 10 8 8 8 8 8 8 8 8 8 8 8 8 8 10 8 10 10 10 12 12 9 9 9 13 9 9 9 9 9 12 10 10 8 8 8 8 8 10 8 8 8 8 8 8 8 14 12 16 10 10 10 8 8 6 6 8 10 10 8 8 8 8 8 8 8 8 8 8 10 8 10 10 10 9 9 9 11 11 10 8 8 8 9 9 9 10 10 10 10 8 8 10 8 8 8 8 8 8 8 8 8 8 11 10 11 20 18 12 10 10 10 8 8 6 6 8 8 6 6 7 7 12 16 16 11 11 8 8 8 8 6 6 6 6 6 6 7 7 12 10 9 6 7 6 11 11 11 10 8 10 10 10 8 8 10 6 6 8 6 6 6 6 6 6 8 6 7 8 8 10 10 10 11 10 8 8 8 8 8 8 8 8 8 6 7 8 6 6 6 6 8 8 9 10 10 12 12 7 7 8 8 8 8 8 8 8 8 12 10 10 10 10 10 10 10 10 12 11 11 11 10 8 8 8 8 6 6 8 6 6 8 6 6 6 6 8 8 8 10 10 9 10 8 10 6 7 8 8 6 6 8 8 6 6 8 8 8 6 8 6 6 8 8 8 8 7 6 8 8 8 8 8 8 8 8 8 12 8 8 8 7 7 6 6 6 6 8 8 10 10 8 8 8 8 8 8 8 8 10 8 10 10 8 6 6 8 10 12 12 13 8 6 6 7 6 8 6 8 8 9 8 8 10 8 8 8 8 7 8 6 6 8 8 10 10 9 9 20 9 9 9 3 0 3 8 8 10 9 9 9 10 9 6 8 6 7 6 8 8 6 6 6 7 8 8 11 10 8 8 8 8 8 8 8 8 8 6 6 7 6 10 8 8 8 6 6 7 7 10 8 10 9 8 8 8 8 8 8 8 8 8 8 8 8 8 13 11 12 11 10 8 8 8 8	Open. Hide. 18 21 19 21 11 9 9 9 10 10 11 7 7 7 6 6 8 8 13 13 8 8 10 19 25 30 30 28 25 19 19 9 9 9 9 10 9 10 10 10 11 13 13 15 23 26 39 37 47 47 48 48 53 53 53 53 36 36 34 30 33 34 37 34 36 36 29 29 42 47 48 59 57 57 57 57 48 57 48 54 54 57 57 54 42 42 31 40 40 40 42 36 40 22 19 12 12 12 24 32 57 57 57 57 57 57 57 57 57 50 46 46 41 36 36 35 39 39 42 42 54 57 57 57 68 57 57 50 50 50 57 57 57 57 57 57 57 50 52 52 52 52 52 57 52 52 37 42 42 43 36 50 50 50 50 50 57 57 50 57 50 43 37 37 42 52 57 57 57 57 57 57 52 52 52 57 52 57 52 52 52 50 50 50 50 50 46 52 52 52 52 52 57 50 50 52 52 52 50 50 50 50 47 41 43 50 50 57 44 43 43 44 44 43 43 42 47 48 57 57 57 39 32 24 11 11 11 24 32 42 42 36 40 37 28 28 42 44 44 43 44 47 34 28 23 23 30 33 37 41 42 42 37 37 33 33 26 26 14 26 28 43 40 41 39 39 43 43 48 48 42 42 43 43 43 32 34 32 39 39 39 39 42 47 59 48 48 48 48 47 47 33 29 21 10 10 10 10 10 11 12 18 21 41 37 48 48 48 48 57 47 47 32 32 25 25 25 29 33 40 40 36 35 35 35 32 34 23 23 18 18 12 19 19 12 12 12 12 14 14 22 19 19 19 19 23 28 19 18 13 13 13 28 26 28 17 25 25 37 34 32 25 28 28 19 15 11 15 12 21 21 34 37 47 35 35 35 39 42 37 42 42 28 30 25 25 15 15 10 13 11 21 21 32 40 30 28 25 28 28 37 36 37 25 25 25 28 24 21 21 21 15 10 10 10 10 11 12 12 12 26 24 18 18 12 12 10 15 9 9 9 9 10 12 12 12 12 19 15 12 13 13 13 11 10 10 10 10 10 10 8 9 9 12 12 13 11 11 13 13 10 15 25 30 26 18 18 17 17 18 28 23 28 28 32 24 24 18 19 22 22 32 31 15 15 13 12 14 12 15 9 13 10 10 10 13 11 11 11 15 23 14 14 19 19 19 15 10 10 10 10 9 8 8 8 8 8 8 12 19 18 13 13 12 15 12 13 13 11 14 11 19 19 14 6 6 6 6 8 8 15 17 24 28 23 23 19 19 15 14 14 11 12 14 15 11 11 11 9 9 10 11 10 10 11 13 10 12 10 10 10 11 11 12 18 18 21 17 20 22 21 17 18 20 20 16 19 12 12 12 10 10 8 8 10 9 11 14 12 10 12 10 11 11 10 10 9 9 9 9 9 15 10 12 10 9 9 9 8 8 8 8 8 8 9 10 12 9 10 9 8 8 8 9 8 8 8 8 8 8 8 8 11 8 6 6 8 6 8 10 10 13 13 11 6 6 6 6 8 8 10 10 9 10 19 15 26 11 10 10 10 9 10 12 15 19 19 21 12 11 11 11 8 9 6 8 8 12 8 8 8 8 8 8 8

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no097_c08.g1 MSMg01no097_c08.g1 CHROMAT_FILE:
MSMg01no097_c08.g1 PHD_FILE: MSMg01no097_c08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:53:47 2005
         (291 letters)



>mm_chr13_41632022_41632713
          Length = 692

 Score =  478 bits (247), Expect = e-139
 Identities = 281/293 (95%), Gaps = 3/293 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttttctcctaccaagttggtgttcctaataattttttttttaggaaactaacatttat 60
           ||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||
Sbjct: 201 tcttttctcctaccaagctggtgttcctaataa-tttttttttaggaaactaaaatttat 259

                                                                       
Query: 61  aataaagagtggactgttaaaattggcaaattttgctttgtaatatcaatgagtttatca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aataaagagtggactgttaaaattggcaaattttgctttgtaatatcaatgagtttatca 319

                                                                       
Query: 121 actatattacacattaataaatgacagaaaacctctgatgttttttggggaattttgacc 180
           | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 320 agtatattacacattaataaatgacagaaaacctttgatgttttttggggaattttgacc 379

                                                                       
Query: 181 agc--cagatattcatgaagggagagaaatgattctgagaaaaccaaatttcctctagac 238
           ||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 agagtcagatattcatgaagggagagaaatgattctgagaaaaccaaatttcctctagac 439

                                                                
Query: 239 atttttttttcatattctggcaactcatttgcaatgtgataaaatgcacacaa 291
           ||||||||||||||  | |||||||||||||||||||||||||| ||||||||
Sbjct: 440 atttttttttcataaccaggcaactcatttgcaatgtgataaaacgcacacaa 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 692
Length adjustment: 9
Effective length of query: 282
Effective length of database: 683
Effective search space:   192606
Effective search space used:   192606
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information