BAC Information

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BAC

Clone NameMSMg01-097K18
Chromosome13 (Build37)
Map Location 15,304,223 - 15,391,564
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039916, Hecw1, Mrpl32, Psma2, AW209491, EG665099, LOC670994
Downstream geneEG625121, Gli3, LOC665157, Inhba, LOC625181
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-097K18.T7 (MSMg01no097_k18.b1)MSMg01-097K18.TJ (MSMg01no097_k18.g1)
ACCAG314044AG314045
length758680
length of high quality
(start - end)
199 (178 - 376)110 (96 - 205)
definitionCHROMAT_FILE: MSMg01no097_k18.b1 PHD_FILE: MSMg01no097_k18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:30 2005CHROMAT_FILE: MSMg01no097_k18.g1 PHD_FILE: MSMg01no097_k18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:30 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,391,368 - 15,391,564)(15,304,223 - 15,304,331)
sequence
CCCCCAAAACAACCCNCCACATAAAACCCACCTTTCANNCNNGTAATAAN
NNGGTATCTAAATTGCGGCGCTAAACGACTCACTATATTCAGAGGACCGC
GGAATTCCACCTACTTCCGCAAAAGGATAAGAGAATAGATAGGAGTTTTA
CAACCCCAATGAGAAACTGGACCCACAAAATAATAAATGTTGCATGCTAA
AGCCATCAAATGTATATCCATGGGGACTTTTATAATGATTGATAGCAATG
TGGTTTAGTTGGAATCTTTTGCCTTACTCCCACTGAGAAACATTGTTTAG
AAGGGATGCTCATTATATATTAATGGCAAAAGGTAAAATGAAATCTAATA
AAGCTCCCTCTGATTATCACCTTATAGTAGATACAGGAAGCTCAAGATTA
TGATAAACGATATTTTATTGTCACACCCCCCCACCTTGAATGGGTAGTAG
AACTCATCACCTGATTATTTCAGGAAATGCATACAATAGGTTGCATAAGA
GAAAATGACGCAGAGAGCGGTACTAGAAACTAAAGAAAACCTTAGAGATT
CATAGGCTAAATGTGTTGAATTTACAAAAATTTGATTTCTATAAACCATC
CCCCCAATATTTTTAACATAACCAACAGCACTAAAAACCTAGGGGTAAAA
AAACAATGCCAGGATCTGTTTGAAATTCCAAAAAAAAGTTACCGAATTGT
GGGTGTGTTTGCTAGTGTAAGATACAAAGGGTGAAAATAAAAAAAAAAAA
AAAGGGGG
GCTGGTTTCAAAAAAGGGGAGAACTATAGAAGTTTTCGAGAAATACTCTA
GGTATGTGATCTTTGGTTCCAGCCTTTCTAGTGAGGTTCCAGATCAGCCC
CATATATGCTTTTATTGCCCTCAGTGGCCCCCAGCCCTCATCTGAGTCAC
TTGGCAGTATTTCCAGTGGATAGCTTGGTCAGCTCAGAGCGCCTACACAC
ATGGCTGGAAGGACACAGCATACCTCATGACTAATGTTTCTAAGAGAAAT
AGTTTCCTGAACAGTATTCTCCTCCTGCCCTACCTCCCGTCTTTTTATTA
ACACTCCCCAACCTCAGCACTTCATCCTCGCTGTCTTCTACTGCCACAGT
CAACAGAAACTGGGAAAACCACATTCCTTGACAAGCATCATACTAAACTT
TGTAGACTTACTGGATTTTTAACACATGGGTCACCCTCGACAATTCCCTC
TTTGCCTTCGTCACAGCTTCAAAACATATAGAGTATGTCCACCCAAATGA
GGGCTCTGCAGGGACCACTTTCCTACAGCTAACACTTTCTCCGGTAAGGG
CCAACACGCTTCACAGGCATTATACACCGGGCCATCCCACTTGGGTTGGG
CCTGGGAAAAACAAAAAACAAAAGCGGGTACAAAACTATGGCGTGGGAAA
AAAGTGGANGGGCGAAACAACCAATCAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no097_k18.b1 MSMg01no097_k18.b1 CHROMAT_FILE:
MSMg01no097_k18.b1 PHD_FILE: MSMg01no097_k18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:54:30 2005
         (199 letters)



>mm_chr13_15391168_15391766
          Length = 599

 Score =  327 bits (169), Expect = 3e-94
 Identities = 190/197 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaataataaatgttgcatgctaaagccatcaaatgtatatccatggggacttttataatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 aaataataaatgttgcatgctaaagccatcaaatgtatatccatggggacttttataatg 338

                                                                       
Query: 61  attgatagcaatgtggtttagttggaatcttttgccttactcccactgagaaacattgtt 120
           ||||||||||||||||||||||||  |||||||||||||||||||||| | | ||||| |
Sbjct: 337 attgatagcaatgtggtttagttgctatcttttgccttactcccactgtgtagcattgct 278

                                                                       
Query: 121 tagaagggatgctcattatatattaatggcaaaaggtaaaatgaaatctaataaagctcc 180
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 277 tagaagggatgctcattatatattaatggcaaaaggtaagatgaaatctaataaagctcc 218

                            
Query: 181 ctctgattatcacctta 197
           |||||||||||||||||
Sbjct: 217 ctctgattatcacctta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 199
Length of database: 599
Length adjustment: 8
Effective length of query: 191
Effective length of database: 591
Effective search space:   112881
Effective search space used:   112881
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no097_k18.g1 MSMg01no097_k18.g1 CHROMAT_FILE:
MSMg01no097_k18.g1 PHD_FILE: MSMg01no097_k18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:54:30 2005
         (110 letters)



>mm_chr13_15304023_15304532
          Length = 510

 Score =  195 bits (101), Expect = 5e-55
 Identities = 107/109 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agccccatatatgcttttattgccctcagtggcccccagccctcatctgagtcacttggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agccccatatatgcttttattgccctcagtggcccccagccctcatctgagtcacttggc 260

                                                            
Query: 61  agtatttccagtggatagcttggtcagctcagagcgcctacacacatgg 109
           |||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 261 agtatttccagtggatagcttggtcagctcagaggggctacacacatgg 309


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 110
Length of database: 510
Length adjustment: 8
Effective length of query: 102
Effective length of database: 502
Effective search space:    51204
Effective search space used:    51204
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)