BAC Information

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BAC

Clone NameMSMg01-097L07
Chromosome13 (Build37)
Map Location 77,285,646 - 77,286,201
singlet/doubletsinglet
Overlap gene2210408I21Rik, LOC631139
Upstream geneAK129128, Gm276, Mctp1, LOC666603, EG666607, Ankrd32
Downstream geneLOC675063, D13Mgi7, 1110033M05Rik, 1700013G10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-097L07.T7 (MSMg01no097_l07.b1)MSMg01-097L07.TJ (MSMg01no097_l07.g1)
ACCAG314070AG314071
length686656
length of high quality
(start - end)
556 (71 - 626)567 (56 - 622)
definitionCHROMAT_FILE: MSMg01no097_l07.b1 PHD_FILE: MSMg01no097_l07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:32 2005CHROMAT_FILE: MSMg01no097_l07.g1 PHD_FILE: MSMg01no097_l07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAAGGCCCTTCCCTAAACATAATAAAAGAAATCTACAGCAAACCAGTAG
CCAACGTCAAAGTAAATGGTGAGAAGCTGGAAGCAATCCCACTAAAATCA
GGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACT
TGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGATATCAAGGGGATAC
AAATTGGAAAAGAAGAAGTCAAAATATCACTTTTTGCAGATGATATGATA
GTATATATAAGTGACCCTAAAAATTCCACCAGAGAACTCCTAAACCTGAT
AAACAGCTTCGGTGAAGTAGCTGGATATAAAAATAACTCAAACAAGTCAA
AGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAACACCCCTCTCAATA
GTCACAAATAATATAAAATACCTTGGCATGACTCTAACTAAGGAAGTGAA
AGATCTGTATGATAAGAACTTCAAGTCTCTGGAGAAAGGAATTAAAGAAG
ATCTCAGAAGATGGAAAGATCTCCCATGCTCATAGATTGGCAGGATCAAC
ATTGTAAAAATGGCTATCTTGCCAAAAGCAATCTACAGATTCAATGCAAT
CCCCATCAAAATTCTAACTCAATTCTTCAACGAATT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTTTCTCTTGCCTTATTAATTCAGTTCAAGAGTAAATAGTGAAAAG
GAATGGGGATAGCGGGCATCCTTTTTTTACATTTAAGACCATCTGAAAGA
CTATCAGGGTTCTCTCAGTAGAACACATGTAGGAATCTTATTTTTACTTT
GTTTATAGTCTGTCTTTATTTATTTATTTATTTATTTATTTATTTATTTA
TTTATTTATTTATTTCTCTTGTTCATCTGTTTGTTTTTAGTATTTTTATT
CATACCAATAGCCTAGAACTTAAATGAAAATTAAAGAATCCTCAGTTTTG
TCTTAAAACAGTTATATAGGCTAGTAGTTGAGAACTGAATCAGGGATAAA
ACTCAGCCTCACAGTGCTGGGGTCACAGAGACTTGTCATTATCAATGTCC
TCTGAAGTATGCACCGTCACGGTAATCATTTCTAGAATTCCTGTGAACCT
TTTATTTATTTATCAGTAGTAATTTTTAAAATTATTTTTCTTGTTTTCCT
AATTTAGTAACTTGAATCTTCTCTCTCTCTTTTTCCCTATCTTTCTCTTT
CTAAAGGTCTTTTGATTTCTTTTCCTTTTTAAGCATGAAAGTTCAGGCTG
GTGATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no097_l07.g1 MSMg01no097_l07.g1 CHROMAT_FILE:
MSMg01no097_l07.g1 PHD_FILE: MSMg01no097_l07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:54:32 2005
         (567 letters)



>mm_chr13_77285438_77286404
          Length = 967

 Score = 1048 bits (542), Expect = 0.0
 Identities = 555/564 (98%), Gaps = 8/564 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttctcttgccttattaattcagttcaagagtaaatagtgaaaaggaatggggatagcgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 tttctcttgccttattaattcagttcaagagtaaatagtgaaaaggaatggggatagcgg 268

                                                                       
Query: 61  gcatcctttttttacatttaagaccatctgaaagactatcagggttctctcagtagaaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 gcatcctttttttacatttaagaccatctgaaagactatcagggttctctcagtagaaca 328

                                                                       
Query: 121 catgtaggaatcttatttttactttgtttatagtctgtctttatttatttatttatttat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 catgtaggaatcttatttttactttgtttatagtctgtctttatttatttatttatttat 388

                                                                       
Query: 181 ttatttatttatttatttatttatttatttctcttgttcatctgtttgtttttagtattt 240
           ||||||||||||||||||||||        ||||||||||||||||||||||||||||||
Sbjct: 389 ttatttatttatttatttattt--------ctcttgttcatctgtttgtttttagtattt 440

                                                                       
Query: 241 ttattcataccaatagcctagaacttaaatgaaaattaaagaatcctcagttttgtctta 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttattcaaaccaatagcctagaacttaaatgaaaattaaagaatcctcagttttgtctta 500

                                                                       
Query: 301 aaacagttatataggctagtagttgagaactgaatcagggataaaactcagcctcacagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaacagttatataggctagtagttgagaactgaatcagggataaaactcagcctcacagt 560

                                                                       
Query: 361 gctggggtcacagagacttgtcattatcaatgtcctctgaagtatgcaccgtcacggtaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gctggggtcacagagacttgtcattatcaatgtcctctgaagtatgcaccgtcacggtaa 620

                                                                       
Query: 421 tcatttctagaattcctgtgaaccttttatttatttatcagtagtaatttttaaaattat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcatttctagaattcctgtgaaccttttatttatttatcagtagtaatttttaaaattat 680

                                                                       
Query: 481 ttttcttgttttcctaatttagtaacttgaatcttctctctctctttttccctatctttc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttttcttgttttcctaatttagtaacttgaatcttctctctctctttttccctatctttc 740

                                   
Query: 541 tctttctaaaggtcttttgatttc 564
           ||||||||||||||||||||||||
Sbjct: 741 tctttctaaaggtcttttgatttc 764


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 52
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space:   533049
Effective search space used:   533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)