BAC Information

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BAC

Clone NameMSMg01-097P13
Chromosome13 (Build37)
Map Location 103,665,191 - 103,809,134
singlet/doubletdoublet
Overlap geneMast4
Upstream geneCd180
Downstream geneEG621312, EG432800, LOC432801, LOC100040045, Ppia-ps13_1282.1, Sfrs12, Erbb2ip, LOC100040086, D130037M23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-097P13.T7 (MSMg01no097_p13.b1)MSMg01-097P13.TJ (MSMg01no097_p13.g1)
ACCAG314270AG314271
length764677
length of high quality
(start - end)
359 (130 - 488)374 (51 - 424)
definitionCHROMAT_FILE: MSMg01no097_p13.b1 PHD_FILE: MSMg01no097_p13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:54 2005CHROMAT_FILE: MSMg01no097_p13.g1 PHD_FILE: MSMg01no097_p13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,808,776 - 103,809,134)(103,665,191 - 103,665,564)
sequence
NNNNNNNNNNNNNNNAACCCANNAANNNNNNNNTTTCTCCCCCCCATACN
NNNNNNNAATTATAAACTGCGGCCGCTAATAGACTCCTATTTCGCAGAGG
ATCCGCGGAATTCCTCATTTTTCCCACAAGCTAGGTGGTGATTTTCTAAG
TCATTGAATAGGCTCTGGTGAATGCAATTCGTTATGTAGAGTTCTGTGTA
CCTTTTTAAAAGGCTTAAATTCAGAGCATTATACCTTGCCTGGTTGTTTC
GAAAAGTCATTTGGATAAAATGAGGTTATTTCCAGAATTCAGGGAGAGAG
AATCACCTTGGTTTTGCAATAGATTTGAAAAAGATTTGTGAGATCTCCAG
CAAGACGAAGGCAACGTTTCTGGAAAGAGAATAAAGAGGTTTTAATTCAA
GCAAAATAAAAGGCATGCAAACCATATTTGGCTATGTCTTAAAACAAATT
TATTTTCTCTATAGCACCCTCTACCCTCCCTCTCGCATAAATATTGAAGC
AAGAATTTAGAATATCTACTGTCAAAGCCAAATAGAAGGCCAGTGTCATG
TTGAATGTTACAAATCCAAAACCAAAATGAAGGGTGAAACAAAAGAAAAA
ATCGAGCGCCGCGTCTGAATTATCATTTAAAGCGGCATGTTTATATAAAG
AGAAAGCGAGTGGCGTAACATATCCCAGAATAACGAGAGGGATGTGCCCC
TTGAAGAACGCCCCTTTATTTTATATATCCCCGGTTCTACCCGTTTCGCC
CTTTTGGTTTTCCT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCCCAAA
ATTCTCTAGGTGTGGCTTCTGGGGACACCACAACAAAAATGCCTAAGCCT
ATTTAGGAGGGTTCTTTCAATCAAAGAGATTGTACACAGCCAGATAAGGC
ATTTTGTACTTAAGTCACCTGCCAACTGGCTTATGTTCTAAGCTCATGCT
TGTAATGTGATCTGCTATGAAGGGAAGCTTCTGTCCGCTATAGAAAGCCT
CCCTCAGTGAGCACTGAGTACATGAACAGGACTATATACTTACAGGAAAA
TGTCATTCTGGGACACAGATGCATCTCCAGATGGACACTGAATGCAGATG
TGAACTCACAACACAGTGCTACGTGACAATAAGCTGGTTGCTTTTCTTTG
AAATCAATTTATCTTATCAGACGCTGTCTTCCCACAGCAGATCCCGAGTT
AATCGGTTTCTTTCTTTCCTTTTTTCTCTTTTTCTCTTCGATCTTTGTTT
TTTGATGTGAAAACTAGATTATCCTAGTAAAATTCGCAGGGCTCTACACC
TCGCTGTTTCCACACCATAACCGGGCCCCCCTAAAAGCGGCCCTCCACTT
CTGACTTTGCTCAAAAACCTCTCTCTGTTGGTCACAAAGCTCATACATTT
TCTACCCCCTAAACCACGCCTGTTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no097_p13.b1 MSMg01no097_p13.b1 CHROMAT_FILE:
MSMg01no097_p13.b1 PHD_FILE: MSMg01no097_p13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:54:54 2005
         (359 letters)



>mm_chr13_103808576_103809334
          Length = 759

 Score =  671 bits (347), Expect = 0.0
 Identities = 356/359 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gctaggtggtgattttctaagtcattgaataggctctggtgaatgcaattcgttatgtag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gctaggtggtgattttctaagtcattgaataggctctggtgaatgcaattcgttatgtag 500

                                                                       
Query: 61  agttctgtgtacctttttaaaaggcttaaattcagagcattataccttgcctggttgttt 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 499 agttctgtgtacctttttaaaaggcttaaattcagagcattatgccttgcctggttgttt 440

                                                                       
Query: 121 cgaaaagtcatttggataaaatgaggttatttccagaattcagggagagagaatcacctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 cgaaaagtcatttggataaaatgaggttatttccagaattcagggagagagaatcacctt 380

                                                                       
Query: 181 ggttttgcaatagatttgaaaaagatttgtgagatctccagcaagacgaaggcaacgttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ggttttgcaatagatttgaaaaagatttgtgagatctccagcaagacgaaggcaacgttt 320

                                                                       
Query: 241 ctggaaagagaataaagaggttttaattcaagcaaaataaaaggcatgcaaaccatattt 300
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ctggaaagagaagaaagaggttttaattcaagcaaaataaaaggcatgcaaaccatattt 260

                                                                      
Query: 301 ggctatgtcttaaaacaaatttattttctctatagcaccctctaccctccctctcgcat 359
           |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ggctatgttttaaaacaaatttattttctctatagcaccctctaccctccctctcgcat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 359
Length of database: 759
Length adjustment: 9
Effective length of query: 350
Effective length of database: 750
Effective search space:   262500
Effective search space used:   262500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no097_p13.g1 MSMg01no097_p13.g1 CHROMAT_FILE:
MSMg01no097_p13.g1 PHD_FILE: MSMg01no097_p13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:54:54 2005
         (374 letters)



>mm_chr13_103664991_103665764
          Length = 774

 Score =  685 bits (354), Expect = 0.0
 Identities = 369/374 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   attctctaggtgtggcttctggggacaccacaacaaaaatgcctaagcctatttaggagg 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 attctctaggtgtggcttctggggacaccacaacaaaaatacctaagcctatttaggagg 260

                                                                       
Query: 61  gttctttcaatcaaagagattgtacacagccagataaggcattttgtacttaagtcacct 120
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| 
Sbjct: 261 gttctttcaatcaaagagattgtacaaagccagataaggcattttgtacttaagtcaccg 320

                                                                       
Query: 121 gccaactggcttatgttctaagctcatgcttgtaatgtgatctgctatgaagggaagctt 180
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gccaactggcttatgctctaagctcatgcttgtaatgtgatctgctatgaagggaagctt 380

                                                                       
Query: 181 ctgtccgctatagaaagcctccctcagtgagcactgagtacatgaacaggactatatact 240
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 381 ctgtccgctatagaaagcctccctcagtgagcactgagtagatgaacaggactatatact 440

                                                                       
Query: 241 tacaggaaaatgtcattctgggacacagatgcatctccagatggacactgaatgcagatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tacaggaaaatgtcattctgggacacagatgcatctccagatggacactgaatgcagatg 500

                                                                       
Query: 301 tgaactcacaacacagtgctacgtgacaataagctggttgcttttctttgaaatcaattt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgaactcacaacacagtgctacgtgacaataagctggttgcttttctttgaaatcaattt 560

                         
Query: 361 atcttatcagacgc 374
           ||||||||||||||
Sbjct: 561 atcttatcagacgc 574


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 774
Length adjustment: 9
Effective length of query: 365
Effective length of database: 765
Effective search space:   279225
Effective search space used:   279225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)