BAC Information

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BAC

Clone NameMSMg01-098D04
Chromosome13 (Build37)
Map Location 96,409,498 - 96,497,311
singlet/doubletdoublet
Overlap geneIqgap2, F2rl2
Upstream geneTbca, Otp, Wdr41, Pde8b, Zbed3, Aggf1, Crhbp, S100z, F2rl1, F2r
Downstream geneSv2c, LOC667582, 1200014M14Rik, 9330128J19Rik, Polk, Col4a3bp, Hmgcr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-098D04.T7 (MSMg01no098_d04.b1)MSMg01-098D04.TJ (MSMg01no098_d04.g1)
ACCAG314440AG314441
length697755
length of high quality
(start - end)		575 (36 - 610)447 (121 - 567)
definitionCHROMAT_FILE: MSMg01no098_d04.b1 PHD_FILE: MSMg01no098_d04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:13 2005CHROMAT_FILE: MSMg01no098_d04.g1 PHD_FILE: MSMg01no098_d04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,496,741 - 96,497,311)(96,409,498 - 96,409,944)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTACAT
TTCAAAAAGAAAGCGTGAATATATGGGTGGTGATATACGAAGCCCAGCCT
CGGGGCTTTCTTCCTTCTACATGTGAAGGTTGAGATTTTCATTATCCTTG
GAAGAAATGAATTTCAGGAAGAAATTAATACTGCCAACGAGCCATCTGAG
CTCCACAAACTTCAAGAGGAGAAATGGTCCTGTAGATAGAAATGTTTATA
ACTTAACCAACCTTCTCTTTTGTGTGTTTAATAAAATTCTCTATAAATAA
CTATTTGATATCCAATGACCTAACTTTCTGACCACAGATTTTACCAAATC
GGCTATATTTTCATTTCCATTTAAAAATATCGGGTGGTTTCTACCATCAG
CACCAGCTAAAATTGGTAAGGGTGCTGCCTTGTTTGGTAGCTTTGGTCTT
CTGAAATTTTCATCTCTGGAAAGGTTGTAGTCCAGTGGTTGTGAAAGTCC
AGTGGTGTAGTCCAGTGAAAGTTGTGTAGTCAATGGTGTGACCGTGCGCT
GTTCATAAACTTTAAAATCTCAAAGTAAAGTATCAAATGTCTCCAGGCTC
ATTCCAGTCTTGAAGGTCACTACCTCAGTGCTGAGGCAGTTACAATCATA
GTGGCCAGTTCAGGCCCTTGGTAGATGCTTTGGTGTGTAGGTCAGCG

NNNNNNNNNNNNNNNCCCCCCCCCCCNCCCCCCCNNNNNCAACAAATTAN
NCATCTATGATAGGGGTGGCCTGGCGGCCGCCTTCAAAAAAAATTTAGGT
GAACTATATATGCTCAAAGGAATTCTAGATGACGTCAGGCCTGTGGAATT
CATTGTCAAAATTCTACCTTCACGGTCTATATCTAAGCCGGCACCTGCTT
CAAGTGCAGGGATCTCAACTTCCCCTCCCTACTATGTGCTCAAGGGCACA
GGGCATTGTGGACAGGCAGATCGGGCAGATCGAAGGCTACCTGGAGCTCC
CCGCACCCCACCCCCTCACAGTTCCTGTTTATGATTTATGAGCTGCGTGG
GTCAGTGCAAATTATGTATTCCTTATAGGGTTTTTTTGTTTTGTTTTGTT
TTGTTTTAATTTTTAAAAGGGAAACAGTTTGACAGAAAGACTTCATGTAA
ACAGCCCTTTGTGTTGGGGTCTGACAGATGGTGAGGAGCACACCTGTAAC
CATGGCAACTATGTTGCACAAGATGGCAGCTGCTGGCCATCACATGGGAA
CTATGTTGCACAAGATGGTAGCTGCTGGCCATCACATCCCACTGAGTCCC
TGACACCTGGCTGGACCAGACAGACAGATGTGAGTGCACGACACACATTC
TAAGCTAAAGACTTAGTACAGATGCACAATACCTTCCTTAACAATCTCTT
CCATTCATTTCCATAAAAAATGAAAAATGTTTTTAATACCTTGAGTCAAA
TACAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no098_d04.b1 MSMg01no098_d04.b1 CHROMAT_FILE:
MSMg01no098_d04.b1 PHD_FILE: MSMg01no098_d04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:13 2005
         (575 letters)



>mm_chr13_96496537_96497511
          Length = 975

 Score = 1089 bits (563), Expect = 0.0
 Identities = 569/571 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctacatttcaaaaagaaagcgtgaatatatgggtggtgatatacgaagcccagcc 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 gaattctacatttgaaaaagaaagcgtgaatatatgggtggtgatatacgaagcccagcc 716

                                                                       
Query: 65  tcggggctttcttccttctacatgtgaaggttgagattttcattatccttggaagaaatg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 tcggggctttcttccttctacatgtgaaggttgagattttcattatccttggaagaaatg 656

                                                                       
Query: 125 aatttcaggaagaaattaatactgccaacgagccatctgagctccacaaacttcaagagg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 aatttcaggaagaaattaatactgccaacgagccatctgagctccacaaacttcaagagg 596

                                                                       
Query: 185 agaaatggtcctgtagatagaaatgtttataacttaaccaaccttctcttttgtgtgttt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 agaaatggtcctgtagatagaaatgtttataacttaaccaaccttctcttttgtgtgttt 536

                                                                       
Query: 245 aataaaattctctataaataactatttgatatccaatgacctaactttctgaccacagat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 aataaaattctctataaataactatttgatatccaatgacctaactttctgaccacagat 476

                                                                       
Query: 305 tttaccaaatcggctatattttcatttccatttaaaaatatcgggtggtttctaccatca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 tttaccaaatcggctatattttcatttccatttaaaaatatcgggtggtttctaccatca 416

                                                                       
Query: 365 gcaccagctaaaattggtaagggtgctgccttgtttggtagctttggtcttctgaaattt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 gcaccagctaaaattggtaagggtgctgccttgtttggtagctttggtcttctgaaattt 356

                                                                       
Query: 425 tcatctctggaaaggttgtagtccagtggttgtgaaagtccagtggtgtagtccagtgaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 tcatctctggaaaggttgtagtccagtggttgtgaaagtccagtggtgtagtccagtgaa 296

                                                                       
Query: 485 agttgtgtagtcaatggtgtgaccgtgcgctgttcataaactttaaaatctcaaagtaaa 544
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 295 agttgtgtagtcaatggtgtgaccgtgggctgttcataaactttaaaatctcaaagtaaa 236

                                          
Query: 545 gtatcaaatgtctccaggctcattccagtct 575
           |||||||||||||||||||||||||||||||
Sbjct: 235 gtatcaaatgtctccaggctcattccagtct 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 975
Length adjustment: 10
Effective length of query: 565
Effective length of database: 965
Effective search space:   545225
Effective search space used:   545225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no098_d04.g1 MSMg01no098_d04.g1 CHROMAT_FILE:
MSMg01no098_d04.g1 PHD_FILE: MSMg01no098_d04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:14 2005
         (447 letters)



>mm_chr13_96409298_96410144
          Length = 847

 Score =  857 bits (443), Expect = 0.0
 Identities = 446/447 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aattctagatgacgtcaggcctgtggaattcattgtcaaaattctaccttcacggtctat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aattctagatgacgtcaggcctgtggaattcattgtcaaaattctaccttcacggtctat 260

                                                                       
Query: 61  atctaagccggcacctgcttcaagtgcagggatctcaacttcccctccctactatgtgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atctaagccggcacctgcttcaagtgcagggatctcaacttcccctccctactatgtgct 320

                                                                       
Query: 121 caagggcacagggcattgtggacaggcagatcgggcagatcgaaggctacctggagctcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caagggcacagggcattgtggacaggcagatcgggcagatcgaaggctacctggagctcc 380

                                                                       
Query: 181 ccgcaccccaccccctcacagttcctgtttatgatttatgagctgcgtgggtcagtgcaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccgcaccccaccccctcacagttcctgtttatgatttatgagctgcgtgggtcagtgcaa 440

                                                                       
Query: 241 attatgtattccttatagggtttttttgttttgttttgttttgttttaatttttaaaagg 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attatgtaatccttatagggtttttttgttttgttttgttttgttttaatttttaaaagg 500

                                                                       
Query: 301 gaaacagtttgacagaaagacttcatgtaaacagccctttgtgttggggtctgacagatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaaacagtttgacagaaagacttcatgtaaacagccctttgtgttggggtctgacagatg 560

                                                                       
Query: 361 gtgaggagcacacctgtaaccatggcaactatgttgcacaagatggcagctgctggccat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtgaggagcacacctgtaaccatggcaactatgttgcacaagatggcagctgctggccat 620

                                      
Query: 421 cacatgggaactatgttgcacaagatg 447
           |||||||||||||||||||||||||||
Sbjct: 621 cacatgggaactatgttgcacaagatg 647


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 847
Length adjustment: 10
Effective length of query: 437
Effective length of database: 837
Effective search space:   365769
Effective search space used:   365769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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