BAC Information

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BAC

Clone NameMSMg01-098F12
Chromosome13 (Build37)
Map Location 88,686,557 - 88,686,874
singlet/doubletsinglet
Overlap geneEG435375
Upstream geneLOC675707, LOC667230
Downstream geneEdil3, Hapln1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-098F12.T7 (MSMg01no098_f12.b1)MSMg01-098F12.TJ (MSMg01no098_f12.g1)
ACCAG314550AG314551
length681761
length of high quality
(start - end)
321 (18 - 338)---
definitionCHROMAT_FILE: MSMg01no098_f12.b1 PHD_FILE: MSMg01no098_f12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:25 2005CHROMAT_FILE: MSMg01no098_f12.g1 PHD_FILE: MSMg01no098_f12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TACCTATCCGAAGAGGATCCGCGGAATTCCTATGTTACTCAATATTTCTC
TTGCATGGATGTTGACATAGTCATGGTGAATTTCTGACAGTCTGATCGCT
GCAAGGGAAGGAAAGAGGGTTCTATAGACACTGAAGAGATCATTAAGGAC
AGACGTGAGCACAACCCTGTAGGGGACCTTTTCTGAATTTTCAATGTTAC
ATATTTGAATTTGTCTGTAATTCATGTAAAATTTTCCTGTTTTAGTATCT
ATTAATTTGTTTTTGTATTTTCTATTTCCACCCTTTTATTATTCCATGAA
GAGTCACTTATATTTTTATAGTAGCCTATGTTCTATGTGGAATAGATGCT
AACGTTGAAAGTAAATCTATAAGGGTTATATTAACGCCTATAACTGATTC
AGTAAAATATGTGTGTGAGCCGAGAAAGAACTCATGTGACTACCAGATCA
TCAAACTCCTTCTCACAGAGAAATCACACAGGAATAAAAAGTGAGCGAAC
TCTCCTTACCCAACTATGTAATATACATCCGCTTTGGAAACTTCACAAGA
TAAACATCATGTGAGATTTACCGTGTGGCCAGCATTAATACGTATGCTAT
TATCACTGATCTCGATCTTAATGCCCATGTGATACTGATCTTCCTAGTGG
AGTACACGTTGGTTGCCCCTTAGACTTAACC
NTTGGGGGGGGNTNTNNNTGTTCCCNCCCCTTCCCCCCCTTTCCCCATCT
ACTTTNTTTTCAATGATAGGGGGAGGCCTGGNGGCCGGCCGTCCAAGCCG
CAAGGNGAANNANAGAATTCCCAGAGAAAGGGGNAGNGNNNAGGAGGGAN
GAACNNAAAGACGGCAGAAAAAAACACCCCAAAACGAGGCAGACNAAAAG
AGGGGGAACANGCAACAGGACACAACGGCAACAAGCACNCGAAACCGGAG
GCCCAGACCCCACANCCAAAAGGGANNAGACCGCGCAGCCAAAAGGAGGN
GGCCTGACTTTCTAGGGAGGCCAAGAGGAAGAAGGGACCCCCACCAACAG
CGAGAANAGACCGGCAACGAGATTTTTTTTTTTGACGGCGCAGGACGAAG
ACGACGGNCGACTTTTTTTTGCCCGCCTCTTATAAGTTAAGAAATTAGAG
TTTGTATAGCCAAAAATTTGGCGAAAAAAAAAAAATGGAATAGGGGGTGG
GTATTGCATCCAACGAGGCACAGAAAATATTTATCAATGATGAGAGCACA
TTTTTAACACTGGGCGCATTATGAACTTGAGAAGGAAACTTGATTCAGAC
TGAAAAGGAACAGAATTTTGATTAGAGGGCACATGAATTATATTTCATCT
AACACTATCCAAATCATTTATGAAACTGCCTAGACCCTGAAGAGTTTAAC
TAGGACTAATATTTTTTTTGTCCACGAAAAGAATTCTTTGAAAATAATTA
TATTTTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no098_f12.b1 MSMg01no098_f12.b1 CHROMAT_FILE:
MSMg01no098_f12.b1 PHD_FILE: MSMg01no098_f12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:25 2005
         (321 letters)



>mm_chr13_88686352_88687074
          Length = 723

 Score =  553 bits (286), Expect = e-162
 Identities = 310/318 (97%), Gaps = 2/318 (0%)
 Strand = Plus / Minus

                                                                       
Query: 6   ggaattcctatgttactc-aatatttctcttgcatggatgttgac-atagtcatggtgaa 63
           ||||||||||||  | || |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 523 ggaattcctatgggagtcaaatatttctcttgcatggatgttgacaatagtcatggtgaa 464

                                                                       
Query: 64  tttctgacagtctgatcgctgcaagggaaggaaagagggttctatagacactgaagagat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 463 tttctgacagtctgatcgctgcaagggaaggaaagagggttctatagacactgaagagag 404

                                                                       
Query: 124 cattaaggacagacgtgagcacaaccctgtaggggaccttttctgaattttcaatgttac 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 cattaaggacagacgtgagcacaaccctgtaggggaccttttctgaattttcaatgttac 344

                                                                       
Query: 184 atatttgaatttgtctgtaattcatgtaaaattttcctgttttagtatctattaatttgt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 atatttgaatttgtctgtaattcatgtaaaattttcctgttttagtatctattaatttgt 284

                                                                       
Query: 244 ttttgtattttctatttccacccttttattattccatgaagagtcacttatatttttata 303
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 283 ttttgtattttctatttccacccttttattagtccatgaagagtcacttatatttttata 224

                             
Query: 304 gtagcctatgttctatgt 321
           |||||||| |||||||||
Sbjct: 223 gtagcctaggttctatgt 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 723
Length adjustment: 9
Effective length of query: 312
Effective length of database: 714
Effective search space:   222768
Effective search space used:   222768
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)