BAC Information

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BAC

Clone NameMSMg01-099H24
Chromosome13 (Build37)
Map Location 67,678,746 - 67,679,390
singlet/doubletsinglet
Overlap geneZfp87
Upstream geneMzf6d, Vmn2r-ps106, LOC666027, LOC100042492, LOC100041947, EG382769, LOC666052, EG432768, LOC666061, Uqcrb, Mterfd1, Ptdss1, Zfp712, Zfp708, Zfp759, Rsl1, LOC674699, Zfp455, Zfp458, Zfp457, A230042K10Rik, E130120F12Rik, Zfp456, 2810487A22Rik, Zfp459, C330011K17Rik, LOC666098, 9630025I21Rik, Zfp817, Zfp748
Downstream geneA530054K11Rik, LOC328277, 3830402I07Rik, EG666137, Zfp85-rs1, LOC674597, Zfp273, BC048507, LOC666185, LOC100042687, LOC100042692, LOC674779, LOC677603, LOC100042124, LOC666222, AA414992, LOC666238, EG666245, EG666272
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-099H24.T7 (MSMg01no099_h24.b1)MSMg01-099H24.TJ (MSMg01no099_h24.g1)
ACCAG315422AG315423
length694936
length of high quality
(start - end)		648 (47 - 694)---
definitionCHROMAT_FILE: MSMg01no099_h24.b1 PHD_FILE: MSMg01no099_h24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:01 2005CHROMAT_FILE: MSMg01no099_h24.g1 PHD_FILE: MSMg01no099_h24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCTCTAATCTCTTTAAATCCAGCCTGCGAGCTCACCTAGGTGTCT
TCAGTTTGGTAAATGCTGATTTCAGCAACCTGGCATCTTGGACTACTGCT
AAATAAAATGTTCTTTGCTTTTGTATACTATTTGAGTGTGGGGTCTCATT
CTTCGATGAATCATGGACCCTTACAAAAATTTGATAAACATTTCTGTGAA
AGGCTCTACTCACAGGCTAAAATAGAGTGCTGCAACTACAAGACATTAAA
AGAGCCAGATTGCTTTGTGACTACCCATGCTCACAGCTGTGCAGGAGTCC
AAGAAGTGCACAAATCCTCCTCTGCGAGATCCTTTCTTTTTGTTGTTGTT
GTTGTCATATCCTTATGTGATTTTGTTATTAGAGTGATACTAGCTTCATA
GAGGTACTTCGTGGATAAGACTCTCATTCCTATATATATATTTTTAATAG
TTGAAGAAGGATTAGTTGTAGATCTCAGAAAACTGCATTGCCAATCCATC
TGGGCATGAAATGTTCTTTTAGTTCAAAGACTGTTTATCAAATTTTCAAT
CTCCCCATTTTTTAGTCCATCTAGGCTATTAATTTCTTCATTAATTCTAT
GTATATGTAAAACATACATAGGAATGAAAATGAAATCACACAAA

GCGTTCCGCTTGCTTGTATTTTAACCCCCCGCCTCCTTGGTCTGGCCGGT
TGTTCCTATATCTTCCCCTAAAAAGATCCCGTTGGAAGGGACGTACGCAC
CGGGGCCGCCCTAAATACCGCCCTATACAACAAGGTTGCGTAAAAAAAAA
TATCGCCGATAACCCGAAATCACCCACCTGATCGTATTCCCGCTCGTTAC
AGGCGCAAAAACTCTATACGCGCCCCCTACGGTTCGATCTTGCAGTTTCC
CTCTGCTCATTTTATTGAATATCCGTCGTAAAAAATTCAACCCGGAAATT
AGGACGGCCGGCCGCCCATTTTTCTTTTCCCCGCATATCTTCAACCCCTA
TCCCCATTACATAAGCGGTCGCCCTTTTTGTTAATTTCCCTCGGCCTTTT
TTACCAGTCTATTTATAATATCACTGACTCACATATACTCGCATCTTCCA
ACATCTAATTTATTATAGCGGCCTCTGTTTTTCCGGTTAAAGCGTGTTTA
TTTATTAAAAACAAACCCTCTTGTTATGACAAGCCGCGTTTTCCCGCTTA
TTAAACGCGCCTCCCCTTCACCCACAACGCCATAACAACAGAATTTACTT
GCGTCCTAATATTTACTGATTCGATATGACCGCACCATAATATCCGGGCG
CACGTACAGCAAGAAAATTCCCCCCCCTAGGCCGCGATAACCTTTTATAC
GCCCGACATCTCTCCCGTTTGCTTTTATTCCCCACGAAAAAAAAACGCAA
AAAAATATCTATACTCTCTATCGTTTCACGCGGAATTTATGCACTCCGCG
GGATGCGAGGAGTGATAAACTAGTACGCGGTTTTCCCGGCTCTTTACCGC
CTATTTTTTTTTTTCCGCAATATTTTCTCTACCCCCGATTTAAAAATATG
CCCACGTCTCCCTTTTTTTTGCACGCCCTCCCTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no099_h24.b1 MSMg01no099_h24.b1 CHROMAT_FILE:
MSMg01no099_h24.b1 PHD_FILE: MSMg01no099_h24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:01 2005
         (648 letters)



>mm_chr13_67678663_67679710
          Length = 1048

 Score = 1239 bits (641), Expect = 0.0
 Identities = 644/645 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcctctaatctctttaaatccagcctgcgagctcacctaggtgtcttcagtttgg 63
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 ggaattcctctaatctgtttaaatccagcctgcgagctcacctaggtgtcttcagtttgg 669

                                                                       
Query: 64  taaatgctgatttcagcaacctggcatcttggactactgctaaataaaatgttctttgct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 taaatgctgatttcagcaacctggcatcttggactactgctaaataaaatgttctttgct 609

                                                                       
Query: 124 tttgtatactatttgagtgtggggtctcattcttcgatgaatcatggacccttacaaaaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 tttgtatactatttgagtgtggggtctcattcttcgatgaatcatggacccttacaaaaa 549

                                                                       
Query: 184 tttgataaacatttctgtgaaaggctctactcacaggctaaaatagagtgctgcaactac 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 tttgataaacatttctgtgaaaggctctactcacaggctaaaatagagtgctgcaactac 489

                                                                       
Query: 244 aagacattaaaagagccagattgctttgtgactacccatgctcacagctgtgcaggagtc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aagacattaaaagagccagattgctttgtgactacccatgctcacagctgtgcaggagtc 429

                                                                       
Query: 304 caagaagtgcacaaatcctcctctgcgagatcctttctttttgttgttgttgttgtcata 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 caagaagtgcacaaatcctcctctgcgagatcctttctttttgttgttgttgttgtcata 369

                                                                       
Query: 364 tccttatgtgattttgttattagagtgatactagcttcatagaggtacttcgtggataag 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 tccttatgtgattttgttattagagtgatactagcttcatagaggtacttcgtggataag 309

                                                                       
Query: 424 actctcattcctatatatatatttttaatagttgaagaaggattagttgtagatctcaga 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 actctcattcctatatatatatttttaatagttgaagaaggattagttgtagatctcaga 249

                                                                       
Query: 484 aaactgcattgccaatccatctgggcatgaaatgttcttttagttcaaagactgtttatc 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 aaactgcattgccaatccatctgggcatgaaatgttcttttagttcaaagactgtttatc 189

                                                                       
Query: 544 aaattttcaatctccccattttttagtccatctaggctattaatttcttcattaattcta 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 aaattttcaatctccccattttttagtccatctaggctattaatttcttcattaattcta 129

                                                        
Query: 604 tgtatatgtaaaacatacataggaatgaaaatgaaatcacacaaa 648
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 tgtatatgtaaaacatacataggaatgaaaatgaaatcacacaaa 84


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space:   662244
Effective search space used:   662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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