BAC Information

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BAC

Clone NameMSMg01-099M05
Chromosome13 (Build37)
Map Location 54,996,751 - 55,129,845
singlet/doubletdoublet
Overlap geneUnc5a, Hk3, Uimc1
Upstream geneE130119H09Rik, Drd1a, Sfxn1, Hrh2, LOC100040535, Cplx2, Thoc3, LOC100040543, 4732471D19Rik, 4833439L19Rik, Arl10, D13Wsu177e, Higd2a, Cltb, Ubxd8, Rn4.5s-ps3, Rnf44, BC040758, Gprin1, Sncb, Eif4e1b, Tspan17
Downstream geneLOC622707, Zfp346, Fgfr4, Nsd1, Rab24, Prelid1, Mxd3, Lman2, Rgs14, Slc34a1, Pfn3, F12, Gprk6, Prr7, Dbn1, Pdlim7, Dok3, Ddx41, BC021381, Tmed9, B4galt7, Caml, Ddx46, B230219D22Rik, 2310047H23Rik, Pcbd2, Catsper3, Pitx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-099M05.T7 (MSMg01no099_m05.b1)MSMg01-099M05.TJ (MSMg01no099_m05.g1)
ACCAG315624AG315625
length720724
length of high quality
(start - end)
199 (329 - 527)264 (129 - 392)
definitionCHROMAT_FILE: MSMg01no099_m05.b1 PHD_FILE: MSMg01no099_m05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:23 2005CHROMAT_FILE: MSMg01no099_m05.g1 PHD_FILE: MSMg01no099_m05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:23 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,129,647 - 55,129,845)(54,996,751 - 54,997,014)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCTGT
ATATTCCCCTCTCTATCTAATTATTTATTTACCTTTCTGTCCAGGATGCC
CTCACCAGAGGTGGAACAGGCTAGCTGCAGCAGAGAGATGCAGAGTACCC
TCTCACAGCTCAACTTAAATGAGTCTCCCATCAAGTCTTTTGTTCCTGTT
TCAGAAGCTACAAATTGCTTAGTGGACTTTAAAGAACAGTTTGCTTTCCG
GTCACGAACTAAATCAGGCAGAGGAAGGAGGAGAAAATCTTGAATTTCTT
GAGACTGGACGTTGACCATAATACACATCGTTGGGTTGATCGTGTTCATT
AAGTATAGTGGTCTCTAGTTTGTTGTGAGAGTTCTGACCCTGTTGTTATC
ACCACCAGCACCCATTCAGTATCCTGGCTTTATATTTTATAAGATCAGTT
CAGACAACTGTGAATATTATTCTGTTTGAATTTGCTTACAGTTAAAATTT
AAATATATTTACCTTTGTATGAAATCTTATTTCACTAGATGGAAGTGTTT
TTTTTTCACTTCTGTTTTAAGCTTTGGGGCAGGGATATTTCAGTTGAAGA
GGCAGTTTTCCTCATAAGCTATGTGTTCCTGAATGAATTTCATCTGCTAA
TCTCTGACCCCCTACTCCCATCCCTTTAATTTACTCCTGCCCAATTCTGA
ACATTGACTGAACCTTGAAT
CGATGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCACTCATGTTCATGCTGTCACAGGCTCT
CTACCGATGGGGTGTGAGCAGCATGAAGAGCCGGGGTAGGGTGTTCTCGA
GGAAACTGCTGGATAAATGTCAGCATGGAGCATGTGAGGCCCAGCAAGTA
CTTTCTGGAAACTTTCAGACTAGATTCTGCGCAGCTGCCCTCAAAGCACC
TTAAAGGCACACCAGAGTTTCCTAAGGTGAGTCCAGCCTGTGTTCTGGCC
CCTGTATTCCCCGGGGATGCTGTTCTCATCATTGACAGCCCATGCTCGCT
GGAGAACTGGCGTTCTTAAGGTTTTTGTTATTGTTTGCTGTACAGTGAAG
CCTGGCCCCCCAGACCGACCGGATGTTGCGCAAGCTAGTGGCTGTCAAGC
TGCCTGCATACCTGAGTCTCAATGACCCCTGTCGGATATCACAATGAAAT
CTATTCCCCTGCCGCAGCTGGGATGCGGTGGCATACTGGCGTGCCGGCTT
CCTTTATGAAACCGCTTTAAAGCATCCCTTTTCACCGAAGTCCCTTTTGA
GTGCGCCCCATTTTGGACTTGGTCATTTACCTTAAGCTCCCCTGATCTGA
ACCTGATGATGTCCCCCTCTTAAAAGCAATATACAGTCTTCAGAAGAAAA
AAGGCCTTCGTGTTATAAAGCACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no099_m05.b1 MSMg01no099_m05.b1 CHROMAT_FILE:
MSMg01no099_m05.b1 PHD_FILE: MSMg01no099_m05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:23 2005
         (199 letters)



>mm_chr13_55129447_55130045
          Length = 599

 Score =  369 bits (191), Expect = e-107
 Identities = 197/199 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cgttgggttgatcgtgttcattaagtatagtggtctctagtttgttgtgagagttctgac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 cgttgggttgatcgtgttcattaagtatagtggtctctagtttgttgtgagagttctgac 340

                                                                       
Query: 61  cctgttgttatcaccaccagcacccattcagtatcctggctttatattttataagatcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 cctgttgttatcaccaccagcacccattcagtatcctggctttatattttataagatcag 280

                                                                       
Query: 121 ttcagacaactgtgaatattattctgtttgaatttgcttacagttaaaatttaaatatat 180
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 279 ttcagacaactgtgaatattattctgtttgaatttgcttatagttaaaatttaaatatat 220

                              
Query: 181 ttacctttgtatgaaatct 199
           ||| |||||||||||||||
Sbjct: 219 ttatctttgtatgaaatct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 199
Length of database: 599
Length adjustment: 8
Effective length of query: 191
Effective length of database: 591
Effective search space:   112881
Effective search space used:   112881
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no099_m05.g1 MSMg01no099_m05.g1 CHROMAT_FILE:
MSMg01no099_m05.g1 PHD_FILE: MSMg01no099_m05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:23 2005
         (264 letters)



>mm_chr13_54996551_54997214
          Length = 664

 Score =  487 bits (252), Expect = e-142
 Identities = 261/264 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agccggggtagggtgttctcgaggaaactgctggataaatgtcagcatggagcatgtgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agccggggtagggtgttctcgaggaaactgctggataaatgtcagcatggagcatgtgag 260

                                                                       
Query: 61  gcccagcaagtactttctggaaactttcagactagattctgcgcagctgccctcaaagca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcccagcaagtactttctggaaactttcagactagattctgcgcagctgccctcaaagca 320

                                                                       
Query: 121 ccttaaaggcacaccagagtttcctaaggtgagtccagcctgtgttctggcccctgtatt 180
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccttaaaggcacaccggagtttcctaaggtgagtccagcctgtgttctggcccctgtatt 380

                                                                       
Query: 181 ccccggggatgctgttctcatcattgacagcccatgctcgctggagaactggcgttctta 240
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccccggggatgctgggctcatcattgacagcccatgctcgctggagaactggcgttctta 440

                                   
Query: 241 aggtttttgttattgtttgctgta 264
           ||||||||||||||||||||||||
Sbjct: 441 aggtttttgttattgtttgctgta 464


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 264
Length of database: 664
Length adjustment: 9
Effective length of query: 255
Effective length of database: 655
Effective search space:   167025
Effective search space used:   167025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)