BAC Information

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BAC

Clone NameMSMg01-099M16
Chromosome13 (Build37)
Map Location 57,775,231 - 57,775,610
singlet/doubletsinglet
Overlap geneSpock1
Upstream geneSmad5, EG627415, Trpc7, LOC100040995
Downstream geneKlhl3, Hnrpa0, 5133401N09Rik, Ubqln1, LOC671252, Gkap1, Kif27, Hnrpk, Rmi1, LOC100041086, Slc28a3, LOC100041510
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-099M16.T7 (MSMg01no099_m16.b1)MSMg01-099M16.TJ (MSMg01no099_m16.g1)
ACCAG315646AG315647
length706748
length of high quality
(start - end)
385 (44 - 428)308 (76 - 383)
definitionCHROMAT_FILE: MSMg01no099_m16.b1 PHD_FILE: MSMg01no099_m16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:25 2005CHROMAT_FILE: MSMg01no099_m16.g1 PHD_FILE: MSMg01no099_m16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCCTTGATGCCCGCATTAAAAAAAATCAATGATCTTTTCAACTTAAT
AGCCAATCTGGAAAGCAATTTTAGAAAAATAATTGGTTTCAGAAATGGAA
AAGGCTCAGACATGAGTGTGTCTCCCCATTACCATCTGTGGCTTTACAAG
GCTGTTCCCAGGCCTTGTATAACATTTATAAGGAATAATTATACACCTAA
TGATTATTATACCAATTGTTTGCTCTAATCAATACTTAAGGACAGAAACA
GAGGAGGGAAATAATTAAACATTTAATATTGCTCCTTATAAATAAGAGGG
AAATTGAAGGCCATGCAAGCATTTGGATCTTGGCAGGAATAAGAATCCTC
CGAGTGACAGCGTCTCAGGTGACAGGGTCCTCGAATGGGAACAGTGATTC
TCAGTTTGGCAAGGAACCGACGTGGTTCTGGAATCAGAACTAAGGCAACA
TTGACAACCCCAAGAAGGCTGTGGCCAGACAACAGGCTAGGGTTAGAACC
CAGCCTGTCACTGTCCAACCTCATGAATAGAGCCATTTCCTCTGCAGGGC
CTTGTTGGCGTGGACATGTGGCGCAGGCATCTGTGAATTTGCAGTCCTCA
TTAACGGATTTCTGTCTTCTTCGTGGGAACGGTTTGCCTACCCACCGTGT
TCCTTT
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGGCTTGTACTGGCTGATTTTGTGT
CAACTTGACACAGCTGGAGTTATCACAGAGAAAGGAGCTTCAGTTGAGAA
AATGCCTCCCATGAGATCCAACTGTAAGGCATTTCCTCAATAAGTGATCA
AGGGGGAAAGGCCCCTTGTGGATGGGACCATCTCTGGGCTGGTAGTCTTG
GGTTCTATAAGAGAGCAGGCTGAGCAAGCCAGGAGAAGCAAGCCAGTAAA
GAACACCCCTCCATGGCCTCTGCATCATCTCCTGCTTCCTGACCTGTTTG
AGTTCCAGTCCTGACTTCCTTTGCTGATGAACAGCAGTATGGAATTGTAA
GCTGAATAAACCCTTTCCCCCCCAACTTGCTTCTTGGTCATGATGTTTTG
TCCAGGAATAGAAACCCTGACTAAGACAAGTCTCTTGGCAGAAAAGTGTC
TCGTGTCGGACTGACAATGAGGTGTTCACTTATATCATTGTGGTAGGCTC
TGGTACATGGACCGTGTAGGAGTACTCTGCTTGACCCGGTTAATACTCTC
TTATTCCCTGTTCCACCCTACCTTTTTTCTTTTTTAATCTCCCCTTCTTA
TCGCTCCTGCTCCGGAATACCCCTTCTCAAGATTCTTTATGCGCCCTGAT
CGGGACTCCCTCGTTATAGTTTCTCTCTTCGGCGTTTATTGTTTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no099_m16.b1 MSMg01no099_m16.b1 CHROMAT_FILE:
MSMg01no099_m16.b1 PHD_FILE: MSMg01no099_m16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:25 2005
         (385 letters)



>mm_chr13_57775027_57775810
          Length = 784

 Score =  729 bits (377), Expect = 0.0
 Identities = 380/381 (99%), Gaps = 1/381 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctccttgatgcccgcattaaaaaaaatcaatgatcttttcaacttaatagccaat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctccttgatgcccgcattaaaaaaaatcaatgatcttttcaacttaatagccaat 264

                                                                       
Query: 65  ctggaaagcaattttagaaaaataattggtttcagaaatggaaaaggctcagacatgagt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctggaaagcaattttagaaaaataattggtttcagaaatggaaaaggctcagacatgagt 324

                                                                       
Query: 125 gtgtctccccattaccatctgtggctttacaaggctgttcccaggccttgtataacattt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtgtctccccattaccatctgtggctttacaaggctgttcccaggccttgtataacattt 384

                                                                       
Query: 185 ataaggaataattatacacctaatgattattataccaattgtttgctctaatcaatactt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ataaggaataattatacacctaatgattattataccaattgtttgctctaatcaatactt 444

                                                                       
Query: 245 aaggacagaaacagaggagggaaataattaaacatttaatattgctccttataaataaga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaggacagaaacagaggagggaaataattaaacatttaatattgctccttataaataaga 504

                                                                       
Query: 305 gggaaattgaaggccatgcaagcatttggatcttggcaggaataagaatcctccgagtga 364
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 505 gggaaattgaaggccatgcaagcatt-ggatcttggcaggaataagaatcctccgagtga 563

                                
Query: 365 cagcgtctcaggtgacagggt 385
           |||||||||||||||||||||
Sbjct: 564 cagcgtctcaggtgacagggt 584


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 784
Length adjustment: 9
Effective length of query: 376
Effective length of database: 775
Effective search space:   291400
Effective search space used:   291400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)