BAC Information

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BAC

Clone NameMSMg01-099M17
Chromosome13 (Build37)
Map Location 57,775,231 - 57,775,779
singlet/doubletsinglet
Overlap geneSpock1
Upstream geneSmad5, EG627415, Trpc7, LOC100040995
Downstream geneKlhl3, Hnrpa0, 5133401N09Rik, Ubqln1, LOC671252, Gkap1, Kif27, Hnrpk, Rmi1, LOC100041086, Slc28a3, LOC100041510
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-099M17.T7 (MSMg01no099_m17.b1)MSMg01-099M17.TJ (MSMg01no099_m17.g1)
ACCAG315648AG315649
length719740
length of high quality
(start - end)
554 (40 - 593)---
definitionCHROMAT_FILE: MSMg01no099_m17.b1 PHD_FILE: MSMg01no099_m17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:26 2005CHROMAT_FILE: MSMg01no099_m17.g1 PHD_FILE: MSMg01no099_m17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
CCTTGATGCCCGCATTAAAAAAAATCAATGATCTTTTCAACTTAATAGCC
AATCTGGAAAGCAATTTTAGAAAAATAATTGGTTTCAGAAATGGAAAAGG
CTCAGACATGAGTGTGTCTCCCCATTACCATCTGTGGCTTTACAAGGCTG
TTCCCAGGCCTTGTATAACATTTATAAGGAATAATTATACACCTAATGAT
TATTATACCAATTGTTTGCTCTAATCAATACTTAAGGACAGAAACAGAGG
AGGGAAATAATTAAACATTTAATATTGCTCCTTATAAATAAGAGGGAAAT
TGAAGGCCATGCAAGCATTTGGATCTTGGCAGGAATAAGAATCCTCCGAG
TGACAGCGTCTCAGGTGACAGGGTCCTCGGATGGGGACAGTGATTCTCAG
TTTGGCAAGGAACCGACGTGGTTCTGGAATCAGAACTAAGGCAACATTGA
CAACCCCAAGAAGGCTGTGGCCAGACAACAGGCTAGGGTTAGAACCCAGC
CTGTCACTGTCCAACCTCATGAATAGAGCCATTTCCTCTGCAGGGCCTTG
TTGTCGTGCACATGTGCTGTATGCTTCTGTGAAGGTGGACCCCTCACGAA
TGCACTTCTGGTTTCTCTGTGCGAACGGTTTGCCTACCCACCGTGTTCCC
TTTCTCCTCCAGGTGATTG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGACTTGTACTGGATGATTTTGTGAC
AACTTGACACAGCTGGAGTTATCACAGAGAAAGGAGCTTCAGTTGAGAAA
ATGCCTCCCATGAGATCCAACTGTAAGGCATTTCCTCGATAAGAGATCAA
GGGGCAAAGGCCCCTTGTGGATGGCACCATCTCTGGGCTGGTAGTCTATG
TGTTCTATAAGAGAGCATGCTGAGCAAGCCAGGAGAAGGAAGCCGGTATA
GAACACCCCTCCGTGGCCTCTGCATCAGATCCTGCTTCCTGAACTGTTTG
AGATCCAGTCCTGACTTCCTTTGTTGATGAACAGTAGTATGGAATTGCAA
GATGAATAAACCCTGTCCTCCCCAACTTGCTTCTTGGTAATGATGTTTTG
ACCAGAAATAGAAACCCTGACTAAGACAAGTCTCTTGGCAGATGAGTGTC
TCGGGGAGTACTGATAATGAGGTGCTCACTTAAATCATGCGGTATGGTCT
GGTAGATGGACAGCGTAGCAGAACACGCTTGACCAAACTAACACATCTTA
TTCCTGGACCACGAGCAATTCCCTGAGAATTATATATGAAACGCACCGGA
GGGAATAACTTCATCGNCAGCTCATGGTTCTGGGATTAACGGACGTAAGA
GCTTATGAAGTGCAAATGCTCGCTAGACATTGTTTTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no099_m17.b1 MSMg01no099_m17.b1 CHROMAT_FILE:
MSMg01no099_m17.b1 PHD_FILE: MSMg01no099_m17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:26 2005
         (554 letters)



>mm_chr13_57775027_57775979
          Length = 953

 Score = 1017 bits (526), Expect = 0.0
 Identities = 544/550 (98%), Gaps = 1/550 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctccttgatgcccgcattaaaaaaaatcaatgatcttttcaacttaatagccaat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctccttgatgcccgcattaaaaaaaatcaatgatcttttcaacttaatagccaat 264

                                                                       
Query: 65  ctggaaagcaattttagaaaaataattggtttcagaaatggaaaaggctcagacatgagt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctggaaagcaattttagaaaaataattggtttcagaaatggaaaaggctcagacatgagt 324

                                                                       
Query: 125 gtgtctccccattaccatctgtggctttacaaggctgttcccaggccttgtataacattt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtgtctccccattaccatctgtggctttacaaggctgttcccaggccttgtataacattt 384

                                                                       
Query: 185 ataaggaataattatacacctaatgattattataccaattgtttgctctaatcaatactt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ataaggaataattatacacctaatgattattataccaattgtttgctctaatcaatactt 444

                                                                       
Query: 245 aaggacagaaacagaggagggaaataattaaacatttaatattgctccttataaataaga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaggacagaaacagaggagggaaataattaaacatttaatattgctccttataaataaga 504

                                                                       
Query: 305 gggaaattgaaggccatgcaagcatttggatcttggcaggaataagaatcctccgagtga 364
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 505 gggaaattgaaggccatgcaagcatt-ggatcttggcaggaataagaatcctccgagtga 563

                                                                       
Query: 365 cagcgtctcaggtgacagggtcctcggatggggacagtgattctcagtttggcaaggaac 424
           |||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||| ||
Sbjct: 564 cagcgtctcaggtgacagggtcctcggatggggacagtaattctcaatttgccaagggac 623

                                                                       
Query: 425 cgacgtggttctggaatcagaactaaggcaacattgacaaccccaagaaggctgtggcca 484
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 624 cgacgtggttctggaatcagaactaaggcaaccttgacaaccccaagaaggctgtggcca 683

                                                                       
Query: 485 gacaacaggctagggttagaacccagcctgtcactgtccaacctcatgaatagagccatt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gacaacaggctagggttagaacccagcctgtcactgtccaacctcatgaatagagccatt 743

                     
Query: 545 tcctctgcag 554
           ||||||||||
Sbjct: 744 tcctctgcag 753


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 953
Length adjustment: 10
Effective length of query: 544
Effective length of database: 943
Effective search space:   512992
Effective search space used:   512992
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)