BAC Information

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BAC

Clone NameMSMg01-101A11
Chromosome13 (Build37)
Map Location 42,408,254 - 42,408,548
singlet/doubletsinglet
Overlap genenone
Upstream geneNedd9, EG621976, EG328231, 9530008L14Rik, LOC100039272, Hivep1, Edn1
Downstream geneHn1-ps4, Phactr1, Tbc1d7, Gfod1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-101A11.T7 (MSMg01no101_a11.b1)MSMg01-101A11.TJ (MSMg01no101_a11.g1)
ACCAG316547AG316548
length712819
length of high quality
(start - end)
295 (74 - 368)92 (131 - 222)
definitionCHROMAT_FILE: MSMg01no101_a11.b1 PHD_FILE: MSMg01no101_a11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:05 2005CHROMAT_FILE: MSMg01no101_a11.g1 PHD_FILE: MSMg01no101_a11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGGATCCGCGGAA
TTCTTTCTATCCCTGACAGTGCCAACATTTCTTATGCATCATTCTCACAA
TAAGAACATTTACCCAACGCTTTAGTTAATTAACACAAAGGTAAACTGCA
TTTTAAAACGTTTCTTGTTATCCTTTGTTTCGTCTTTCATCACTATCTTC
TGCTTATGGTGGGGCGGAGTACCATCAATTGAGACAAGGAGCATAAAAGA
AGGATCAGAGTAAACGGAAAGGTTGGAAATGACTGAACTTCAACATTGAG
CATGCACAGTTTAAAATTTGTACTTATCAGCATGGACATGTGGAGTTTAA
GATTTGTACTCATGGCATCTTCAACCATATCCTACATTATTAAGATGGAT
ATAATAAATGAGATGTACCATCTTACAGATTTACTAAGTGTCAAGCTATG
ATAGACATCATTTCATCCACCTATACCATACATCCTGGTCTCCATCCTAG
GTTACAATTGAAGCTAATCCTAGCTATCGCTATCGTTAACATCTGTGAAA
CTCGGAATGTAGACATAATGGCTATGATTTGCTTTCTTCAACCCACTAAA
ATGTTGAAACATTTAATCGGATGTGTGGGTCTACAACTTAGAACAATAGA
AAATGTTTCCAAGCCAATGGAATTCATAATAATGTCCAAGGCAAATGCAC
ATGGCGGCTAAC
AATAAAAAGTAAATTTTGGTTTATGCAACACACCGCGTCCNCCCCATAGC
NGGTGACGATGACATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTCATTTATTTTGTAACTT
CTAATTAGGGCGGAAGTGGTTGGGTTGCTCTCGCGGAGAGTCAGATCTCT
TGCGAAAAGCATGAAAGAAGGAGGCACTGGCTTTTTCCTCACACCCTAGT
AGCTTAGCAGGCCTTTGCTTTCCACATGGGCGTGTGATAAATATAGAACT
TTCTTATGCCTTTTGGCAAAATAAGTTTAAAGGAATCCCATCTAAAAAGT
ACCTAGTTACAGTAAATACATATATATATTTCTTTCTCTTATACATGAAG
CCGTGTTTCCTCCAGACTCCTTTGCTAGGAATCTGGAGACTCTATAAAAT
CATAAGCTTGTGGCCCTTGGAGTCTCCTAAGACAGGTTATAGAGGTCCCT
CAAGGAACCAGGGGAGGTATTACTGCAATATGGAACATTAATTTTAACAT
ATGCTACTCGCAACAGATTCTAATCTTGTTTCGTCTGATTTACTAGGAAA
CTACTGACCTCCCCACATGGGTTGTAGACCTTCACCTTCTCGCTTATATG
CTCTCCGATCCTTGCCCCTCTCCTATTAATACAACCACATACCCCGGTTG
GATAAAGATTTTTTTCTCAGACTCCCTCCTTTATCATTCCCCAAAGGAAT
TCGCTTCTATCTTACTATTTCTATTATATTATTCTATTTTCCTTTAAATT
TTTTTTATAAATAACTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no101_a11.b1 MSMg01no101_a11.b1 CHROMAT_FILE:
MSMg01no101_a11.b1 PHD_FILE: MSMg01no101_a11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:59:05 2005
         (295 letters)



>mm_chr13_42408054_42408748
          Length = 695

 Score =  501 bits (259), Expect = e-146
 Identities = 286/295 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacatttcttatgcatcattctcacaataagaacatttacccaacgctttagttaattaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 aacatttcttatgcatcattctcacaataagaacatttacccaacgctttagttagttaa 260

                                                                       
Query: 61  cacaaaggtaaactgcattttaaaacgtttcttgttatcctttgtttcgtctttcatcac 120
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 cacaaaggtaaactgcattttaaaacgtttcttgttatccttcgtttcgtctttcatcac 320

                                                                       
Query: 121 tatcttctgcttatggtggggcggagtaccatcaattgagacaaggagcataaaagaagg 180
           ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatcttctgcttatggtggagcagagtaccatcaattgagacaaggagcataaaagaagg 380

                                                                       
Query: 181 atcagagtaaacggaaaggttggaaatgactgaacttcaacattgagcatgcacagttta 240
           ||||||||||| ||||||||||||||||| |||||||||||| ||||||||| |||||||
Sbjct: 381 atcagagtaaaaggaaaggttggaaatgattgaacttcaacactgagcatgctcagttta 440

                                                                  
Query: 241 aaatttgtacttatcagcatggacatgtggagtttaagatttgtactcatggcat 295
           |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 441 aaatttgtacttatcagcatggacatgtggagtttacgatttgtactcatggcat 495


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 695
Length adjustment: 9
Effective length of query: 286
Effective length of database: 686
Effective search space:   196196
Effective search space used:   196196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)