BAC Information

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BAC

Clone NameMSMg01-101B23
Chromosome13 (Build37)
Map Location 82,855,888 - 82,856,176
singlet/doubletsinglet
Overlap genenone
Upstream gene2900024O10Rik, Cetn3, LOC238756
Downstream geneLOC667018, Mef2c, LOC100043111
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-101B23.T7 (MSMg01no101_b23.b1)MSMg01-101B23.TJ (MSMg01no101_b23.g1)
ACCAG316617AG316618
length788762
length of high quality
(start - end)
539 (112 - 650)289 (69 - 357)
definitionCHROMAT_FILE: MSMg01no101_b23.b1 PHD_FILE: MSMg01no101_b23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:13 2005CHROMAT_FILE: MSMg01no101_b23.g1 PHD_FILE: MSMg01no101_b23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCCCCCCCNCCC
CCACAAATCNNNNACTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXGCCGCGGAATTCAAGCAGTTCCCTTAAGTTCCACTCAGTTTG
TGCAGACAATGCAGTCAGTACAGTTTAGTTCATGGAATTCAGAAGTATTT
TTAACACAGAGCAATTCACTGGGAAACCTAGAGAAGCAAGTTTGGAGAGG
AGCTTGAACCAGAACAGCTGAGTGAAACTAGCCAACCAATTTTCAGAAAG
TACTAAAAATGATAAGGCTTTTCAGCAATAAGCTTTTAAGACAAAAACTA
CATCTGGTGAATAAAAGTTACACTTACATAAATAAATTTATATCTATAAT
CCAGAATAAAACTCAAGACCAAGTGGATTAAAGACCTCAACATAAACCCA
GATACACTAAACCTGATAGAAGAAAAATTTGGGAGTAACCTTGACCTCTT
GAAACAGAAGACAACTTTCAGAACAGAACAGCAATCATACATTCACTATG
ATCAACAATTAATGGGACTTAATGAAACTGAAAAGCTTCTATAAAGTAGC
AGTTTGGTGTTCCATTTTTCATTTCTTCCCTTGGGTGTCTGGGACAATGT
ACATTGAGCAGGAAAGGATAAAATGAAGTCCAGAATGGGTGAGACAGCAA
GATTCTGGTTGGCAGTGAATGCCCTGAAGGACGTGGGTGTGTCTCTTCCA
AAGATTTCCGTGTTGCAGTGTTGGAAATGGGACACAGC
AATGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAATAATCAGAAATGAAACTGGGGAAATATAGA
AAATATTAGAGCCATTCAGATTTGTGTGCAAATGCTGTTTATTTGCTAAT
ATAGCCTCAAGAAAGCTCTTAAATCTCTTTAACTTTTTTCATGTTGAAAT
GTATACATTAATTACCACAGAAAGACTACAGCTACCAATAACCTATGAAA
TGTATTATATCATATACAATAATAGGTGTGGTGATAGTTGATCACAAGCC
AGGAATCTGAGTTTAAGTCAGTGACTTATTCTTAGTGACTTGAAACCCAC
ATTCAATTAGAAATTTGGTTTTGACATCATTTAATGAAGAAAAATATTTT
TAGAAAGGTAGATAGTAATGTTTTTTAGACTTTGCAAGCTCTGGGCTCTT
TATTGTAATTACTAGGTTCTGTTGTTATATGATTAGCTGACTGCTATATA
TACTTGACAAGGTGTCGCTAACTTTCAACAGTTGTACTCCCCAGCTCTGT
ATCATGAAATACTGAGTCTTACAAATATCCTTTCTTATCTACCATTTATC
CTCCTCGCTGCTCTATCGAGAGTAGACTGCACTACTTCTCTCAGTACGAT
TTCCCCGGTTTAGCTTTTCATCTTACAAAGTCGCTTCTTATTATCCAACC
ATCACGTTTGATTCCTTACGGCTCACACTTTTTGTAAGTCTTACCAACTC
TTGTTTTTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no101_b23.g1 MSMg01no101_b23.g1 CHROMAT_FILE:
MSMg01no101_b23.g1 PHD_FILE: MSMg01no101_b23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:59:13 2005
         (289 letters)



>mm_chr13_82855688_82856376
          Length = 689

 Score =  551 bits (285), Expect = e-161
 Identities = 288/289 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aataatcagaaatgaaactggggaaatatagaaaatattagagccattcagatttgtgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 aataatcagaaatgaaactggggaaatatagaaaatattagagccattcagatttgtgtg 430

                                                                       
Query: 61  caaatgctgtttatttgctaatatagcctcaagaaagctcttaaatctctttaacttttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 429 caaatgctgtttatttgctaatatagcctcaagaaagctcttaaatctctttaacatttt 370

                                                                       
Query: 121 tcatgttgaaatgtatacattaattaccacagaaagactacagctaccaataacctatga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 tcatgttgaaatgtatacattaattaccacagaaagactacagctaccaataacctatga 310

                                                                       
Query: 181 aatgtattatatcatatacaataataggtgtggtgatagttgatcacaagccaggaatct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 aatgtattatatcatatacaataataggtgtggtgatagttgatcacaagccaggaatct 250

                                                            
Query: 241 gagtttaagtcagtgacttattcttagtgacttgaaacccacattcaat 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 gagtttaagtcagtgacttattcttagtgacttgaaacccacattcaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)