BAC Information

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BAC

Clone NameMSMg01-101F11
Chromosome13 (Build37)
Map Location 111,704,176 - 111,704,356
singlet/doubletsinglet
Overlap genenone
Upstream genePde4d, LOC100040577, Rab3c, EG432803, 9830130M13Rik, Plk2, LOC100040614
Downstream geneLOC668159, 4732495G21Rik, LOC100040640, EG621953, Gpbp1, LOC100040666, Mier3, Map3k1, LOC668181
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-101F11.T7 (MSMg01no101_f11.b1)MSMg01-101F11.TJ (MSMg01no101_f11.g1)
ACCAG316779AG316780
length876729
length of high quality
(start - end)
---181 (77 - 257)
definitionCHROMAT_FILE: MSMg01no101_f11.b1 PHD_FILE: MSMg01no101_f11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:30 2005CHROMAT_FILE: MSMg01no101_f11.g1 PHD_FILE: MSMg01no101_f11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTTTTTTTTTNTNTTTTTTTTTTTTNTTTTCTTGTTTTGGTTTGTGT
TTTTTTATATTTGTGGTGTTATATATTCATATTCTAAGAGGGGCGCGGAA
TTCCTGTTTTTCCCAATTGTGTCTGGTGAAAAATTGAATAGAGAATCCTG
ACAATGAAAAAACTCTTCCCTAGAGATTCATCTTATTGTTGCTGGATTGA
GAGAATCATTGATAGTGGAAAGTGCGATGATATTATATAATATATATTTA
TTCTTTATTTTTGTTAGATTCATGGAGGATGGCAGTTGTCATTTGGAGGT
GAAATTATGCCCGAAGTTCAGTAAGTTACGACGCACGGTAGTGGCACGAT
GGTTATTCAATTAGACCGCAAGTAAATTTTATTATGATAAGGAAAAGCAA
AACCGCGAAAGAAGTAGGAAATATCGGTATGACTTCTTAATATCTCACAA
AATCATTACAATTAAAATATTATATAATAAAATATAACATCATAAATTAA
CATATTTATTTCTTTCATATTATTTATGTAGTATCTACAAAAATTTATTA
TATACTTATCATACTTTAATTTGTTCTCCTTTTTAATTTTTTCTTCGCCA
TTAGATAAAAATACAGATATATAACATATAATATTAATATATGCTCGAGA
TAAAACCACAGTCCCCCGCGATGATAAGTAACATATCAATTATCAAATAG
AATACACACTATCCCTATACATAATAGTTCTTTTCCATACTCTCGCATGA
TATTATGTCAAAATCTGATGATTTATATTCTTTATAAATGTTATATTGTA
TATCATTACTATTTTATCTATATTATTTTTTATATCTCTTTATCTCTATT
ACATTATTAGCAATATTTTATTAATT
NCTCAATGCAGTGAGAGGCCTGGAGGCCGCCTGTTTCTAAAACGGGGGTG
ACCTATAGAATGTTCACAGAAATTCCAGACACACGAGTCAGCCACAGAGC
AATCTTACCATTGCAGAGGATGGCCAAAGACTCATATGGAAAGTCCCAGG
TGAAGAGTTCCAATGTAGCCAAACCCATTTCATTTTTAAAAACCTTCACA
GATACAAGGATTTAAGGCATAAAATAACTAAGTGCTGAGTTGCGTTATTT
CATATGAATAAACTAACAAAAGAGAATAAGAGTGGTGGCCACCCCACAGA
AAAGCATAATAATTTGATGGATTTTTTTTTCTCTTCACATTGCATGATTC
CTGGGGAATCAACTTTAGATTCGCACACTTGCTAGCAAGCATCTTTAGCT
GCTAAATCATTTCATTGGCCCAACGATTTGAAATATTACCAATAAACTGT
TTAGCTGATATGTGCTTTGAATTATCTCCAGCCACTTTCTGATTCGAAAG
ATCTTTACGCCCTCCGTAGTAAATAAGTCCTACATTAATGCTCCTTCCGT
GTTCATAATCAATTGCATCATGCTTACCTTCTCTTATATAGTTCCTTCCC
CAACTCTTATCTTCTGTAATTTCTATTCCGTAATTCTCCCCCTCTATCTG
AACCATGTGTCTTTGCTTCCTCCACCCTATATGTCAAGGCCCCTTACAAT
CTCTTGCTAACTCGTTCTTATAGTACCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no101_f11.g1 MSMg01no101_f11.g1 CHROMAT_FILE:
MSMg01no101_f11.g1 PHD_FILE: MSMg01no101_f11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:59:31 2005
         (181 letters)



>mm_chr13_111703976_111704556
          Length = 581

 Score =  311 bits (161), Expect = 1e-89
 Identities = 176/181 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   agacacacgagtcagccacagagcaatcttaccattgcagaggatggccaaagactcata 60
           |||||||||||||||||||||| ||||||||||||||||||||||||  |||||||||||
Sbjct: 201 agacacacgagtcagccacagaacaatcttaccattgcagaggatggagaaagactcata 260

                                                                       
Query: 61  tggaaagtcccaggtgaagagttccaatgtagccaaacccatttcatttttaaaaacctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggaaagtcccaggtgaagagttccaatgtagccaaacccatttcatttttaaaaacctt 320

                                                                       
Query: 121 cacagatacaaggatttaaggcataaaataactaagtgctgagttgcgttatttcatatg 180
           ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 321 cacggatacaaggatttaaggcataaaataactaagtgctgagttgtgttatttcatatg 380

            
Query: 181 a 181
           |
Sbjct: 381 a 381


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 181
Length of database: 581
Length adjustment: 8
Effective length of query: 173
Effective length of database: 573
Effective search space:    99129
Effective search space used:    99129
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)