BAC Information

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BAC

Clone NameMSMg01-101I02
Chromosome13 (Build37)
Map Location 70,302,250 - 70,302,490
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC218332, Pols, A530095I07Rik, Srd5a1, Nsun2, LOC100042260, 3110006E14Rik, 4930547H16Rik, Med10, EG620143, LOC100042291
Downstream gene4930520P13Rik, EG633042, BC018507, EG620473, Adamts16, 8030423J24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-101I02.T7 (MSMg01no101_i02.b1)MSMg01-101I02.TJ (MSMg01no101_i02.g1)
ACCAG316900AG316901
length716813
length of high quality
(start - end)
386 (51 - 436)241 (124 - 364)
definitionCHROMAT_FILE: MSMg01no101_i02.b1 PHD_FILE: MSMg01no101_i02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:44 2005CHROMAT_FILE: MSMg01no101_i02.g1 PHD_FILE: MSMg01no101_i02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTACCTATTTCGAGAGAGAGCGCGGAATTCTTAATTCTCCTCAAAGTATA
GCCTTATCCAGATGGAGAACTTCAAACACCACTGAGGGGTCATCATTTCC
TTCACTGACACCTGTATTTCCTCTACTTATTTAGTCATTGACATCACCTG
GTGCCTCTAATGGCTCATATGGGCCCATAAACAGAGAACTATTTCCCTCA
TATTGCTTCTGCTTACACAGCCTCATCGGAACAAGGGGTGAAAGAGCTCA
TCTATCTATCTGCAGATAAATTAGTTTCCCTACTTCCATAGCTCAGACAG
ATCTGTTGCACCCCCATGTCCCATGGTCTCAACCTCCTGGTTGTGAGATC
TTTTATTTTATTATTTATTTATTTATTTATTAGGTATTTTCTTCATTTAC
ATTTCCAATGCTATCCCAAAAGTCCCCCATACACTCTCCCCCTAATCCCC
TACCCACCCATTCCCCATTCTTTGGCCCTGGCATTCCCCTATACCGAGGC
CATATAAATTTGCATTATCAAAGGCGCTCTCTTTCCAATCCATGATGGTC
GACTAGGCCATCTTTTGATACATAATGCAGCTCGAGACCTGATCTCCGAT
GGGTACCGGGTAGGTCATAAGCGTGGTTCCACCTATAGGGTTGCAAACCC
CTTTAGCTTCTTTGGCAATCTAAGAGAAGGGACCCTAAGCCCCGGGCCAA
TTTCCTTGCGCCTCTC
NNNNNNNNNNNNNNNNNNTTCCTCACCTCTTTCCTCCCCCCCTTTTTTNN
NTCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTTCTGGAATTACCCAGGAGCCCGTCTTTTAGGGTGGAG
ACTTTGTACCTGAATGGGCACCTGTCTGGATTGCTGAAATCTACTTGTGT
GTCTTGTGCCTGTACTTAAGAGGGCTCTGCAACCCTAGAATCTCTGAACA
GGTCTTTTCTGAGTGTGCATCACAGGAAGAAGGTTCTAGCCAGTGTACCA
AGGTCAAAGGTGTTCCATATACAACTTCTGCTATTGCAAGCAGCATGCTT
CTGCTTTGTGTGTGTGAGTGTATTATTTGTTCTTACAAAGTACGCAACAT
AAGCCATTTATGTAAAGATGAGCCTATTTTGAGAGAACATTGAAGCATGC
TGACCAGCTTCATTTCCTGTAGGTCCTAATCCTAGGAGGGTACAAATGTC
TCATCATATTGTTTGGGCGCTTTCTATCTTAACTCACCTATCGAACCTAA
TCTCTTCATAAATCTGACTGAATACTGAATTCCCCACGTGAAAATAATGT
CTCAACCGCGTCGATAACTAAGATTAAACAATTGTATAGTAGATGTAGAT
TCACATCCACTCTGATACCGATCTCCTTTTATTTTCCCTCCGACTTTTCT
AAGTGCTGCCTGCTCTTTGGCATGAATTGGCCACGTATCTTTACCATTAA
AAGTTTCCGACTCCTTTTATCATTTAATTATATAAATACCGGAGCACGTG
GACAACATCCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no101_i02.g1 MSMg01no101_i02.g1 CHROMAT_FILE:
MSMg01no101_i02.g1 PHD_FILE: MSMg01no101_i02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:59:44 2005
         (241 letters)



>mm_chr13_70302050_70302690
          Length = 641

 Score =  458 bits (237), Expect = e-133
 Identities = 240/241 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cccaggagcccgtcttttagggtggagactttgtacctgaatgggcacctgtctggattg 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 cccaggagcccgtcttttagggtggagactttgtacccgaatgggcacctgtctggattg 260

                                                                       
Query: 61  ctgaaatctacttgtgtgtcttgtgcctgtacttaagagggctctgcaaccctagaatct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgaaatctacttgtgtgtcttgtgcctgtacttaagagggctctgcaaccctagaatct 320

                                                                       
Query: 121 ctgaacaggtcttttctgagtgtgcatcacaggaagaaggttctagccagtgtaccaagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgaacaggtcttttctgagtgtgcatcacaggaagaaggttctagccagtgtaccaagg 380

                                                                       
Query: 181 tcaaaggtgttccatatacaacttctgctattgcaagcagcatgcttctgctttgtgtgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcaaaggtgttccatatacaacttctgctattgcaagcagcatgcttctgctttgtgtgt 440

            
Query: 241 g 241
           |
Sbjct: 441 g 441


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)