BAC Information

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BAC

Clone NameMSMg01-102E13
Chromosome13 (Build37)
Map Location 32,138,636 - 32,242,369
singlet/doubletdoublet
Overlap geneGmds
Upstream geneLOC100041266, G630018N14Rik, LOC100042491, Foxq1, LOC100041312, Foxf2, Foxc1, 4930548F15Rik, LOC666212
Downstream geneWrnip1, Serpinb1a, Serpinb1-ps1, Serpinb1c, Serpinb6b, Serpinb9, Serpinb9b, Serpinb1b, LOC628301, Serpinb9c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-102E13.T7 (MSMg01no102_e13.b1)MSMg01-102E13.TJ (MSMg01no102_e13.g1)
ACCAG317473AG317474
length748704
length of high quality
(start - end)
321 (62 - 382)234 (69 - 302)
definitionCHROMAT_FILE: MSMg01no102_e13.b1 PHD_FILE: MSMg01no102_e13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:49 2005CHROMAT_FILE: MSMg01no102_e13.g1 PHD_FILE: MSMg01no102_e13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:50 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,242,053 - 32,242,369)(32,138,636 - 32,138,869)
sequence
CATACGACGTNTGTGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCGCGGAATTCCCTGAATTCTACCGGTACCTAATATCTTG
CATGAGACCTTGTGTTGTGAGGTAATTTAAAACCTTATTAATCCTAGCCC
CATTGAGTCAGGATTTGAGGCATTCCAGACACACTCTTCATTAGAACTCA
GCATCACAGTGTCTGAAAAAAGTTTCACTAAGAAAACTAATAGGGCAAAC
AAGATTTTAAGGAGAGTGTTCAAACTACTTAACACAGGACTTTGTTGATA
AGTACCCTTAAGTGCTTCTTAAGCACTAGAGAATGCTCGTTTACTTATAA
ACTGTGTATTCATTACAAACCTCACTTATCCAGTTATGACATGTATGGAT
TGATAATACATAACGTTTTATTAACTTAATTCTAGTTTCTGTGTTTTATA
GACAGCTTCATCAGCTAATGTCAAACATTAGCTCATATAATTTTTTCTCA
AGAGCACCATTACATTTAGACACAATGATACCCACTAAAAACTTGCCTAA
GAGGAGGGACTGCTTGACCATCTGCTACCGAATTCTGCTGTCTTTATTCC
TTATCTCTTCGCTTGTCACACAGTTTTTGGAAAGTCAGTGAATGTTATAT
CCTAGATTTCCTTCGTTTATACACTTTCTCATTATCACATATTTTCCCCC
TTCACCTTTACAATGCTTTTCCTCAAAGTTTTCTCATACCCTCCTCCC
ACTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCAGAAAAGGCAGGGCTACACAGAGAACCCTGT
CTCTAAAAATCAACAACGCCAACAAGGAAAACAAATGAACAAACAAAATA
GAAGTGTTAATTGGACATATCAACTATTACATAACTAAAATGGTGGCACA
GAGCTTAAAATGATGGAAATTTTCTTGTTAGCAGTAGTAGGTACACTTCC
TATGCAGAGTTAAGTACTTATGCTACAAATTTCTGGTTTTCGCTCATTTA
ATGGGGCAAAGGTAGATTTGCTGGTGATGAACTCAGGATAAAATGGGAAA
AATGTGAACCCTGACCTTTTTAACACCACTTAAAAATCAGAACCAGATCT
GTCAGTGGACCACTGCAGTGCCTTTAGCTTAACAAATTGGAAACCTGATC
TCCCCTCATCCAAGAAGAACAGAGCTTGTCAAAGGCTAAGCTGCTACAGA
CTCGGATGCTGCTGGGACACTCGATCCCTACAGATCAGATGCTTCAAAAG
ACACTGACCACGGTCCACTTGTATCTCGGATTTGTAGCGCTGTGGACCCA
ATCGGTCGTCTTAGGAATGATTCCTCTTACATTTATATGGCACACATATC
TAAGATAACTATTATGTGTCTCACCTAATACCATTTTTACTGCTTAAGCC
CTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no102_e13.b1 MSMg01no102_e13.b1 CHROMAT_FILE:
MSMg01no102_e13.b1 PHD_FILE: MSMg01no102_e13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:49 2005
         (321 letters)



>mm_chr13_32241849_32242569
          Length = 721

 Score =  582 bits (301), Expect = e-171
 Identities = 313/317 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccctgaattctaccggtacctaatatcttgcatgagaccttgtgttgtgaggtaa 64
           ||||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 gaattccctgaatcctagtggtacctaatatcttgcatgagaccttgtgttgtgaggtaa 462

                                                                       
Query: 65  tttaaaaccttattaatcctagccccattgagtcaggatttgaggcattccagacacact 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 tttaaaaccttattaatcctagccccattgagtcaggatttgaggcattccagacacact 402

                                                                       
Query: 125 cttcattagaactcagcatcacagtgtctgaaaaaagtttcactaagaaaactaataggg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 cttcattagaactcagcatcacagtgtctgaaaaaagtttcactaagaaaactaataggg 342

                                                                       
Query: 185 caaacaagattttaaggagagtgttcaaactacttaacacaggactttgttgataagtac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 caaacaagattttaaggagagtgttcaaactacttaacacaggactttgttgataagtac 282

                                                                       
Query: 245 ccttaagtgcttcttaagcactagagaatgctcgtttacttataaactgtgtattcatta 304
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 281 ccttaagtgcttcttaagcactagagaatgctcgcttacttataaactgtgtattcatta 222

                            
Query: 305 caaacctcacttatcca 321
           |||||||||||||||||
Sbjct: 221 caaacctcacttatcca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no102_e13.g1 MSMg01no102_e13.g1 CHROMAT_FILE:
MSMg01no102_e13.g1 PHD_FILE: MSMg01no102_e13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:50 2005
         (234 letters)



>mm_chr13_32138436_32139069
          Length = 634

 Score =  429 bits (222), Expect = e-125
 Identities = 231/234 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagaaaaggcagggctacacagagaaccctgtctctaaaaatcaacaacgccaacaagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 cagaaaaggcagggctacacagagaaccctgtctctaaaaatcaacaacaccaacaagga 260

                                                                       
Query: 61  aaacaaatgaacaaacaaaatagaagtgttaattggacatatcaactattacataactaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaacaaatgaacaaacaaaatagaagtgttaattggacatatcaactattacataactaa 320

                                                                       
Query: 121 aatggtggcacagagcttaaaatgatggaaattttcttgttagcagtagtaggtacactt 180
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacggtggcacagagcttaaaatgatggaaattttcttgttagcagtagtaggtacactt 380

                                                                 
Query: 181 cctatgcagagttaagtacttatgctacaaatttctggttttcgctcatttaat 234
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 381 cctatgcagagttaagtacttatgctacaaatttctggttttcgttcatttaat 434


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)