ATCATXXXXXXXXXXXXXXXXXXXXXXXCTATTTCGAGAGGTCCGCGGAA
TTCAAATGATTCCATTGTTGAATTGCATGGGAAGGGAAGAAGAATTGCTA
TTCTGTAACTAGGACATTCTGAACTCCGAATACAGTGCACACGAACAGAC
ACGAAGGACAAAAATAAGAATGCAGAATTCCCAGTAAACTTAAATGTGCA
CATTTACATAAAACACCATTTTTAAAAGAAGATACTTCAGGTTGTTCTGA
AACTGTGGCCTCTTGGCGGGGCAGGTGCATAGCTGTCTCAAGCTCTTGGG
TTTAATCTCTAGTATTAAAAAAAAATCAATCAAAAGGTGCTCACCAGTCT
CTTTGAAGGTGTTGAGGGTACTCTGAAATTCTCACATCTGTGGGCTTACT
TTGGAAATCCTCACGGATATGGCTACATTTCTAGATGTCAGCAATACAGC
AGGGAACAAAGAGGGCCTATGAGGGTAATTCTTGCTTGTTAAGCTGACAC
ATATTTGGGTGTGTCTGTGAGGGTGCTTCTAGAAGTGATTGGCATGTACG
CCTGTCTGAACCACAGGAAGTGAGAAGTCACGGCTAAATGTGCAATGCAT
ATGGCCATTGTGAGACTGTCCTTCTCTGACCATAAGAACCAATTAAATGA
ACCTCTTCTTACACGTCCACTTACATTTGATTCTTTCTGCTCCAAAGAAG
ACTTTCACAGAAATATGAACGTTT

NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTCGGTCATAAATTAAACTTTGTAGTT
GTTAGGAATCTTTAAGAGTAGTATGGAACCTGCCTAGGGAGAGAAGAAAT
AAAGTGTTGACACCTATCAGAGTTGTTTATACCACTTAGTGGCCTTAGGG
TTTGCAGAAAGAGTTATTCTGTGTTGGAGCATGCTGAAGCCACCAAGACT
AGAGAGCAAAACTAACTTTGGCCTCAGAGGCCAAAGATACTATTTCTGCT
CTTTGGAGAAGAGTCTCTCGCCCAGTCTCCATGCTTGTTGGTTTTGAAGG
GTCAGATGGTCCGGTGTTAAAATAGCTTGTACTGGAGGGTGTCATGTCTG
TGTTCTCCATTAATACTTCACTTTGCTTTTGTCTTCTTTGCAATAACTTT
TATTTTAAAAGCATTGGTGATGAGATTGGAATGCTAAGCAACGTCACATC
TCCCTGCCTTAAACAATTGTTTATTATTATTCTCTGTGTATGAGCGACGG
TCCCATGACGATCACTTTGGGGAGTCAGATCTCTCCTACTGTAGGCTCTC
AGGATTGAACTCAGATAATCAGGCTTCTCAGTGTTTCTCCAAGCTAAACC
ATCCTGAATCTCATGTTGGCGCTTTTAAAATTCATTCAAGCGATTTATCT
TATTTTCATTGT

Query= MSMg01no103_h19.b1 MSMg01no103_h19.b1 CHROMAT_FILE:
MSMg01no103_h19.b1 PHD_FILE: MSMg01no103_h19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:02:25 2005
         (464 letters)



>mm_chr13_40284749_40285612
          Length = 864

 Score =  890 bits (460), Expect = 0.0
 Identities = 463/464 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgaattgcatgggaagggaagaagaattgctattctgtaactaggacattctgaactccg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgaattgcatgggaagggaagaagaattgctattctgtaactaggacattctgaactccg 260

                                                                       
Query: 61  aatacagtgcacacgaacagacacgaaggacaaaaataagaatgcagaattcccagtaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatacagtgcacacgaacagacacgaaggacaaaaataagaatgcagaattcccagtaaa 320

                                                                       
Query: 121 cttaaatgtgcacatttacataaaacaccatttttaaaagaagatacttcaggttgttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttaaatgtgcacatttacataaaacaccatttttaaaagaagatacttcaggttgttct 380

                                                                       
Query: 181 gaaactgtggcctcttggcggggcaggtgcatagctgtctcaagctcttgggtttaatct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaactgtggcctcttggcggggcaggtgcatagctgtctcaagctcttgggtttaatct 440

                                                                       
Query: 241 ctagtattaaaaaaaaatcaatcaaaaggtgctcaccagtctctttgaaggtgttgaggg 300
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 441 ctagtattaaaaaaaaatcaatcaaaaggcgctcaccagtctctttgaaggtgttgaggg 500

                                                                       
Query: 301 tactctgaaattctcacatctgtgggcttactttggaaatcctcacggatatggctacat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tactctgaaattctcacatctgtgggcttactttggaaatcctcacggatatggctacat 560

                                                                       
Query: 361 ttctagatgtcagcaatacagcagggaacaaagagggcctatgagggtaattcttgcttg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttctagatgtcagcaatacagcagggaacaaagagggcctatgagggtaattcttgcttg 620

                                                       
Query: 421 ttaagctgacacatatttgggtgtgtctgtgagggtgcttctag 464
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttaagctgacacatatttgggtgtgtctgtgagggtgcttctag 664


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 864
Length adjustment: 10
Effective length of query: 454
Effective length of database: 854
Effective search space:   387716
Effective search space used:   387716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no103_h19.g1 MSMg01no103_h19.g1 CHROMAT_FILE:
MSMg01no103_h19.g1 PHD_FILE: MSMg01no103_h19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:02:25 2005
         (413 letters)



>mm_chr13_40444749_40445561
          Length = 813

 Score =  760 bits (393), Expect = 0.0
 Identities = 408/413 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcggtcataaattaaactttgtagttgttaggaatctttaagagtagtatggaacctgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 ttcggtcataaattaaactttgtagttgttaggaatctttaagagtagtatggaacctgc 554

                                                                       
Query: 61  ctagggagagaagaaataaagtgttgacacctatcagagttgtttataccacttagtggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 ctagggagagaagaaataaagtgttgacacctatcagagttgtttataccacttagtggc 494

                                                                       
Query: 121 cttagggtttgcagaaagagttattctgtgttggagcatgctgaagccaccaagactaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 cttagggtttgcagaaagagttattctgtgttggagcatgctgaagccaccaagactaga 434

                                                                       
Query: 181 gagcaaaactaactttggcctcagaggccaaagatactatttctgctctttggagaagag 240
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 433 gagcaaaactaactttggcctcagaggccaaagatgctatttctgctctttggagaagag 374

                                                                       
Query: 241 tctctcgcccagtctccatgcttgttggttttgaagggtcagatggtccggtgttaaaat 300
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 tctctagcccagtctccatgcttgttggttttgaagggtcagatggtccggtgttaaaat 314

                                                                       
Query: 301 agcttgtactggagggtgtcatgtctgtgttctccattaatacttcactttgcttttgtc 360
           || ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct: 313 agtttgtactggagggtgtcatgtctgtgttctccattaatacttcgctttgcttttatc 254

                                                                
Query: 361 ttctttgcaataacttttattttaaaagcattggtgatgagattggaatgcta 413
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ttctttgcaataacttttattttaaaagcattggtgatgagattggaatgcta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 813
Length adjustment: 9
Effective length of query: 404
Effective length of database: 804
Effective search space:   324816
Effective search space used:   324816
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)