Query= MSMg01no104_c06.b1 MSMg01no104_c06.b1 CHROMAT_FILE:
MSMg01no104_c06.b1 PHD_FILE: MSMg01no104_c06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:03:18 2005
(563 letters)
>mm_chr13_64751675_64752636
Length = 962
Score = 1031 bits (533), Expect = 0.0
Identities = 552/561 (98%), Gaps = 7/561 (1%)
Strand = Plus / Minus
Query: 6 gaattccaatgtt---ttccgagagctttccataaatgaacatgagctatgttaactttt 62
||||||||||||| | | ||||||||||||||||||||||||||||||||||||||
Sbjct: 781 gaattccaatgttaaat---gtgagctttccataaatgaacatgagctatgttaactttt 725
Query: 63 ccttcggctctttagaatgtgacattgtgttcttagacatacatgaatgtgctatctgtg 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 ccttcggctctttagaatgtgacattgtgttcttagacatacatgaatgtgctatctgtg 665
Query: 123 accccaaggccactccctcacagccctgagtctcagcttcgctgcctgaaaaggttggta 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 accccaaggccactccctcacagccctgagtctcagcttcgctgcctgaaaaggttggta 605
Query: 183 agaggaatatgaaaagtattgtgtggggagcactcagaatgtcttagataatgtcaaagc 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 agaggaatatgaaaagtattgtgtggggagcactcagaatgtcttagataatgtcaaagc 545
Query: 243 aaacttccttcccttgtcctgtattcctgtagcattgcttccctgtccttccttccataa 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 aaacttccttcccttgtcctgtattcctgtagcattgcttccctgtccttccttccataa 485
Query: 303 agcaacgaacaatctattaatcgacagtggatatccaagacacatctcctacaatccttc 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 agcaacgaacaatctattaatcgacagtggatatccaagacacatctcctacaatccttc 425
Query: 363 cttggccagtgcagctagcaggtaggcttaacctcttacaggtgaatgatatgacatggc 422
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 cttggccagtgcagttagcaggtaggcttaacctcttacaggtgaatgatatgacatggc 365
Query: 423 ctgctttgaaaaccacatctctttcttgggtcaaatttctcaaaactaagacctgttgaa 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 ctgctttgaaaaccacatctctttcttgggtcaaatttctcaaaactaagacctgttgaa 305
Query: 483 taagaagagaaaagtttatttggcttatgtattcaggctttcctgagaaagaaaacccat 542
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 taagaagagaaaag-ttatttggcttatgtattcaggctttcctgagaaagaaaacccat 246
Query: 543 aagaggtattcaggtatgtat 563
|||||||||||||||||||||
Sbjct: 245 aagaggtattcaggtatgtat 225
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 962
Length adjustment: 10
Effective length of query: 553
Effective length of database: 952
Effective search space: 526456
Effective search space used: 526456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no104_c06.g1 MSMg01no104_c06.g1 CHROMAT_FILE:
MSMg01no104_c06.g1 PHD_FILE: MSMg01no104_c06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:03:18 2005
(336 letters)
>mm_chr13_64591657_64592392
Length = 736
Score = 650 bits (336), Expect = 0.0
Identities = 336/336 (100%)
Strand = Plus / Plus
Query: 1 ccttgtgaaatagacgctaggggtctgaagtttaagatcgtccttcaccacagagcatgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccttgtgaaatagacgctaggggtctgaagtttaagatcgtccttcaccacagagcatgt 260
Query: 61 ctgaagtcagcatgaggtacttgattttgtatcaaaaaggaaaaagaagaaaaagaattg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgaagtcagcatgaggtacttgattttgtatcaaaaaggaaaaagaagaaaaagaattg 320
Query: 121 atagcaatttcaagaaaatataaacccaaggcaggaaacaggtctcaaatgggttcattt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atagcaatttcaagaaaatataaacccaaggcaggaaacaggtctcaaatgggttcattt 380
Query: 181 tgatttccccggggagctgatgagcaccctcagctgtgacttgctgtctctgcacctacc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgatttccccggggagctgatgagcaccctcagctgtgacttgctgtctctgcacctacc 440
Query: 241 ccagtgcggacagaaaatcatcaagcatacacgtacatctctgcactcctgtgacaatgc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccagtgcggacagaaaatcatcaagcatacacgtacatctctgcactcctgtgacaatgc 500
Query: 301 aaaggcactgcatggtccacctgcttcctctggggg 336
||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaaggcactgcatggtccacctgcttcctctggggg 536
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 736
Length adjustment: 9
Effective length of query: 327
Effective length of database: 727
Effective search space: 237729
Effective search space used: 237729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
