BAC Information

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BAC

Clone NameMSMg01-104O18
Chromosome13 (Build37)
Map Location 49,734,804 - 49,735,142
singlet/doubletsinglet
Overlap geneCenpp
Upstream geneBarx1, Phf2, EG667415, BC010304, C030044B11Rik, Wnk2, Ninj1, 1110007C09Rik, Susd3, Fgd3, Bicd2, Ippk, Tes3-ps, Ecm2, Aspn, Omd, Ogn
Downstream geneNol8, Iars, LOC667488, LOC670357, EG638833, Gm272, EG667503, EG667507, LOC100040099, LOC625110, LOC676907, LOC667546, LOC667552, LOC100040085, LOC100040159, LOC100040176, LOC100040118, Gm906, 2310081J21Rik, LOC676954, LOC667625, LOC667632, EG667637, Fbxw17, Gm806, EG639044
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-104O18.T7 (MSMg01no104_o18.b1)MSMg01-104O18.TJ (MSMg01no104_o18.g1)
ACCAG319411AG319412
length725767
length of high quality
(start - end)
339 (77 - 415)49 (67 - 115)
definitionCHROMAT_FILE: MSMg01no104_o18.b1 PHD_FILE: MSMg01no104_o18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:04:21 2005CHROMAT_FILE: MSMg01no104_o18.g1 PHD_FILE: MSMg01no104_o18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:04:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAGGCGCGGA
ATTCACTTCACTTTCCCGGAAGAAAAAGCAAGTATTGAAGAGAATGTGGG
CAACTAGAAGTCTTAGATGTTGCTGGTGGAAATGCAAGGCAGTAATCACT
TGGGAAAGTAGCTTCACAGTGTCTTAAAGCTAAACATACAACCAGCACTA
TTTCTAGGGAGAGCCTACAGCAGAAGTCAGCCAACCTTTCGCAAAGGGCC
TAATAGGAAATGTGTCTCGATTGGATTTTTATCGTAATTACTCTATACCA
TGAGGTCAATTATAGACAGTATGTAAAAGAATGGGCATGGATGTGTTTCA
TTGAGATACTTCTTCTTAACACTTCTTAGGCATAGTTTGCCCAGCCCTGA
GAGAAATGAGCCATACATACAAAAGCGCTGTACCAGAAAGACTTGCTATG
GTGGAATTCCAGAAAGAACTATTACTAGCATACACATGCTTAAAGGAATC
AGCTGCTGCTGGAGTATATGCATGCAGCCTCAAAATCCTGTCAGAATCAG
AGACTTTAAGTGACTGACGGTGAGACAGCAAAGCTATGACAGACAAAACA
CTCATGGCTATCTCTATGAGAAGAAGGGCCACCCTCCTGCCTCTGATAGA
AGATCATGATAGCTTCTGATGCTAATCGCAAGATATATTGCTTCTTGTAT
AAAGAGCAACTACGTAAACCCTCCA
TACACGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCTGTAATTCAAGAACACACCAAAAGGTCATCATGATGAA
GTTAGCTTTATCCCATAGACCCAGGGATGGTTAAACATAGAGCAGTAAAT
GAAATCCACCTATGTGAGGTGGTGGTGCGTGGGTGACGGCCTGGAGTCTT
CCCCCTCCCCCCCCTCCCCTCCCCTCCCTCCCTCCTTCTTTCTCCCCGCC
CCCTTCCCCCCCCCCTCTTTCTCCTCCCTTTACTTTCCTCCTTTTCTTTC
CCCCCCTCTTCTTTCCCTCTTTTCTCTCCCTTTTCCCTTCTCTTCTTTTC
TTATTTTTTTCTTTCTTTTCTCCCTCTTTTTTTTCCTCTTTCTTCTTTTT
CTCCCCTCCCCCCCATCCCCCTTCCCCCTATTTTCCCACATTTTCCCTCC
GTGTCCCCCTCTCCCCCTTTCCTTCTTCCTCTCTTTTCTTCTTCTTCCCC
TCTTCCCCTCCTTATTTTCCCTTTTTTCCTCCCCTCTTTCCCTTCCCTAT
TCCCCTCCCTCTCTTCTTCTTCCTTCTCCTCCCCTTTTTCCCCTCCCTTT
TTTTTCTCTCTCTCCTCCTTCTCCCCTTTCTTTTCCCCTCTTTTTTCTTC
TCTTCCTTCCCTCCCTCTCCCCCTATTTTCTTTTCCCTCTTTTTTTCCCC
CTCTCCCCCTACCTTTTCCCTTTTTCTTCTCCCCACTCCCCCCTCTTTCC
CTCTCCTTTTTTCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no104_o18.b1 MSMg01no104_o18.b1 CHROMAT_FILE:
MSMg01no104_o18.b1 PHD_FILE: MSMg01no104_o18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:04:21 2005
         (339 letters)



>mm_chr13_49734604_49735342
          Length = 739

 Score =  648 bits (335), Expect = 0.0
 Identities = 338/339 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcaagtattgaagagaatgtgggcaactagaagtcttagatgttgctggtggaaatgca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcaagtattgaagagaatgtgggcaactagaagtcttagatgttgctggtggaaatgca 260

                                                                       
Query: 61  aggcagtaatcacttgggaaagtagcttcacagtgtcttaaagctaaacatacaaccagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggcagtaatcacttgggaaagtagcttcacagtgtcttaaagctaaacatacaaccagc 320

                                                                       
Query: 121 actatttctagggagagcctacagcagaagtcagccaacctttcgcaaagggcctaatag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 321 actatttctagggagagcctacagcagaagtcagccaacctttcgcaaacggcctaatag 380

                                                                       
Query: 181 gaaatgtgtctcgattggatttttatcgtaattactctataccatgaggtcaattataga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaatgtgtctcgattggatttttatcgtaattactctataccatgaggtcaattataga 440

                                                                       
Query: 241 cagtatgtaaaagaatgggcatggatgtgtttcattgagatacttcttcttaacacttct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagtatgtaaaagaatgggcatggatgtgtttcattgagatacttcttcttaacacttct 500

                                                  
Query: 301 taggcatagtttgcccagccctgagagaaatgagccata 339
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taggcatagtttgcccagccctgagagaaatgagccata 539


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space:   240900
Effective search space used:   240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)