BAC Information

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BAC

Clone NameMSMg01-104P14
Chromosome13 (Build37)
Map Location 46,946,584 - 46,946,870
singlet/doubletsinglet
Overlap geneKif13a
Upstream geneAtxn1, 5033430I15Rik, ENSMUSG00000062282, Gm1574, Rbm24, Cap2, C78339, Nup153
Downstream geneLOC544928, Nhlrc1, Tpmt, Aof1, Dek, LOC100039761, Ibrdc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-104P14.T7 (MSMg01no104_p14.b1)MSMg01-104P14.TJ (MSMg01no104_p14.g1)
ACCAG319450AG319451
length7671,324
length of high quality
(start - end)
286 (128 - 413)---
definitionCHROMAT_FILE: MSMg01no104_p14.b1 PHD_FILE: MSMg01no104_p14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:04:26 2005CHROMAT_FILE: MSMg01no104_p14.g1 PHD_FILE: MSMg01no104_p14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:04:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGTTTATATTTTATTTTAACNCTTATTTTCCACCCTCTTTCCCTCCTCCA
TTAGGAGTTCTCTATATTTGCGGCCGCAGTACGACTCCTATTCAAAGAGG
AGCCGCGGAATTCTTTGCTTACAAGAACTGACCTCTCCTCCTCGAGCCGG
GGGATCTCCTGGATTTCCAAACGCTGGCCCTAGGCACTTAGGATAGTGAT
CCCAGCATGCCAGATATGGAGTGTGGGCTTTTATTTTAGTAAACATTTAG
AAGGAAGAAGTCTGGAGTCTGACTCATCTCACTCTATATAAGACGCCATG
CATCATACTGGAGACCTGTATTGTTCTAGGACTAACTCCTTCCGTTGGAG
TCCCTAATGGCTACTCCACAGTTCCTTGTGAAGCCGATTGTATCCTCACT
CCAAAGTCGGTGATGGGAGACACCGAAAGCCTGCATACAACCGAGCACAT
GCATACTGATGGAGGCTGGGCGTGGGAGCTCAAACCTGGGATCTCAGCAC
TTGGGAGGTTGAGGTAGGAGGATTGCTTCAAGTCTTATGCCTGTGTGAGT
GCAATATCAAGCTCTGTGTCAGCATGGGATGTCTCTAACTGACTCACCAG
CGAACCACTTTTTAGAAAGTACTTATGGTATTGATGTATTCATGATAGCT
TAGCTCCTATTTTTCTCCTTCCCCCCGCTCACCTTCTACCTCTTTTAACC
ACCCGTTCTTTCCTTTCCCCCCCTTACTCCTTCATTTTTTCTCCCCTTTC
CTTCTTCCCCCCTTAAC
NTTTTTTATTTTTTTTTNNNANNNTTNTNTTTTTNNNNTTAATNTNTTAT
NTATNTATTTCTTTNNTATTATCATTTTNATAGTANATNNTTTACCTAAT
ATATATNNTTATTTCTCATTATACTTAGTATTATAATCGTCCTTAAATGT
AATATATATATAATAATATATATATTATAATAATTTTTATTTTTTNTTTA
TTCGTATTGTCTTCATATACTTGNTAAANCANCTNATTACNATAAAATAA
CGATAATGAGAAATATAATTGAGCGATGAACTATCAAGTAGAGAGGATNT
GATTAACAGATACCGAGCCATATAATACATATTCTATCTTACATTCATTC
TATGATTCATTGCCCGCGTGACTGTGATATAGTATGCGGCGTCGCGTAAT
GCGTCGCGCGTNGTGGGTATCTGAGTTAAATGTGTTGAATTTCTTGACAT
CGAACTCAGAGACTCATACGTGTATCCGCTTGTGNTATAGTAGATACTAT
AGTATATATCGCGAGTGCCGCGCGCAGTGAGCGCGTCGTATCAGGTGAGA
TCGCGCTGCCGTGGTGGATATTCATCTATCTTTATTATCTCACTCCTCTC
CCTCCTACTCGCTTTATTCTCTCTGTTTTTGTGAGTGTTACTGCGCGGTC
AGTGTTCGTGTCGCGCGCTACTGCTNCGCGCCGTATTGTGGTCATATGAT
CGCGGGAGGCATGGATGAAGACGATCGTGGCAGTACCGATGGATTTAACG
CGCGCGCGTCGCATTCTGCCGCGTGCCTCTCCGCCGATCCGTTGTTGTCA
TGTCCCCGCCGCTGTATACATAGCGCCGCGTGATCATACGTGCGCTCAGC
TGTCGTAGCGCTGCTCTCGTGTGCGCTTAGTTATGCGCCGCCGGCGAGAC
GTCTTCGCGCCCCTGTAGTATGTGACCGCTCGCGCACGCCCATGTTAGTG
TGCGGCGACGATATGCGTAGCGACTCAGCATATATATAATAAGATGAGCG
CGCACTGCTGCTGCGCAGCCACACTTCGCACTCATCTACTATAATCATGC
GTCACATCTATATCACGTCTAACTGATTAGCACGCATATNATTATAATAG
TATAGAAAGTGCACAGCGCGAGCACAGCGCAGAAACGTACATGNACCGCA
CGACGCCAACATACACATACATATTATAATTCACTCACGATATATACGTC
GACGATTAGATACGACGCTCGTGCTATAATACATCCACGTAGCCCATCAC
ACATGAGCACATATAGTTATCGACAGTATATGCACAGAATATATATATNT
ATCGCTCGCGCGACACGCACGCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no104_p14.b1 MSMg01no104_p14.b1 CHROMAT_FILE:
MSMg01no104_p14.b1 PHD_FILE: MSMg01no104_p14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:04:26 2005
         (286 letters)



>mm_chr13_46946384_46947070
          Length = 687

 Score =  501 bits (259), Expect = e-146
 Identities = 280/287 (97%), Gaps = 1/287 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgacctctcctcctcgagccgggggatctcctggatttc-caaacgctggccctaggca 59
           |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct: 201 ctgacctctcctcctcgagccgggggatctcctggatttcacaaacgctggtcctaggca 260

                                                                       
Query: 60  cttaggatagtgatcccagcatgccagatatggagtgtgggcttttattttagtaaacat 119
           ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct: 261 cttaggatagtgatcccagcaagccagatatggagtgtgggcttttatttcagtaaacat 320

                                                                       
Query: 120 ttagaaggaagaagtctggagtctgactcatctcactctatataagacgccatgcatcat 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttagaaggaagaagtctggagtctgactcatctcactctatataagacgccatgcatcat 380

                                                                       
Query: 180 actggagacctgtattgttctaggactaactccttccgttggagtccctaatggctactc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actggagacctgtattgttctaggactaactccttccgttggagtccctaatggctactc 440

                                                          
Query: 240 cacagttccttgtgaagccgattgtatcctcactccaaagtcggtga 286
           ||||| || | ||||||||||||||||||||||||||||||||||||
Sbjct: 441 cacagctcgtggtgaagccgattgtatcctcactccaaagtcggtga 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 687
Length adjustment: 9
Effective length of query: 277
Effective length of database: 678
Effective search space:   187806
Effective search space used:   187806
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)