Query= MSMg01no108_g20.b1 MSMg01no108_g20.b1 CHROMAT_FILE:
MSMg01no108_g20.b1 PHD_FILE: MSMg01no108_g20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:17 2005
(679 letters)
>mm_chr13_21618151_21619230
Length = 1080
Score = 1274 bits (659), Expect = 0.0
Identities = 671/675 (99%), Gaps = 1/675 (0%)
Strand = Plus / Plus
Query: 6 ggaattc-gtcacagcatgcacagctacttactggccgccctaggacattaatttgcctt 64
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 ggaattcagtcacagcatgcacagctacttactggccgccctaggacattaatttgcctt 265
Query: 65 tccaggtcctccaatagggttaccacctcctctccattctgtaactggtgctccttaacc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tccaggtcctccaatagggttaccacctcctctccattctgtaactggtgctccttaacc 325
Query: 125 agagcctgcagctcctctggcaggatggtcaggaactgctccagcaccagcagctccagg 184
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 agagcctgcagctcccctggcaggatggtcaggaactgctccagcaccagcagctccagg 385
Query: 185 atctgctccttgctgttcaagtctggccgcagccactgatggcaaaatgcacggagctgg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 atctgctccttgctgttcaagtctggccgcagccactgatggcaaaatgcacggagctgg 445
Query: 245 atcagagcttcccgaggtcctaatgtctcctggtagcagagctgtctgaagcgtagacga 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 atcagagcttcccgaggtcctaatgtctcctggtagcagagctgtctgaagcgtagacga 505
Query: 305 aacagttcttggccaggtgtgttgttctcatgcacaccggattcctcatcccaaccatga 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 aacagttcttggccaggtgtgttgttctcatgcacaccggattcctcatcccaaccatga 565
Query: 365 tcctcctctatcttgacaatgacaagatcctcttcaggagcctggtctggtggagatggg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 tcctcctctatcttgacaatgacaagatcctcttcaggagcctggtctggtggagatggg 625
Query: 425 gctgaagaaggctttcttggttctgtagccatttagggccagtaaagctcagaagatctc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 gctgaagaaggctttcttggttctgtagccatttagggccagtaaagctcagaagatctc 685
Query: 485 tttcctctcccttctgtatcttcttacaagtcttccaagaacctccagggcacttcttcc 544
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 tttcctctaccttctgtatcttcttacaagtcttccaagaacctccagggcacttcttcc 745
Query: 545 agaacagaaaatgataactatgttaaggtaaggcaaaaatcatagtaacttaccaagata 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 agaacagaaaatgataactatgttaaggtaaggcaaaaatcatagtaacttaccaagata 805
Query: 605 tattagtgagtgccctaaataatctggcagcccaaacccacccatggtacaaacccttcc 664
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 tattaatgagtgccctaaataatctggcagcccaaacccacccatggtacaaacccttcc 865
Query: 665 atttgctttctcttt 679
|||||||||||||||
Sbjct: 866 atttgctttctcttt 880
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1080
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1070
Effective search space: 715830
Effective search space used: 715830
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no108_g20.g1 MSMg01no108_g20.g1 CHROMAT_FILE:
MSMg01no108_g20.g1 PHD_FILE: MSMg01no108_g20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:17 2005
(578 letters)
>mm_chr13_21701278_21702255
Length = 978
Score = 1079 bits (558), Expect = 0.0
Identities = 573/578 (99%)
Strand = Plus / Minus
Query: 1 acggcaattcttttaataccctggggagagaagagaaagaaccaagacagggaactggaa 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 626 acggcaattcttttaataccctggggagagaagagaaagaaccaagagagggaactggaa 567
Query: 61 caaatgtttgtgttgtgtaaccagaatggagtgtttggttagaaggaggaattacaacct 120
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 566 caaatgtttgtgttgtgtaaccagaatggagtgtttggttagaagaaggaattacaacct 507
Query: 121 aaaggaaagaactagaaagaagaggggaggaacaattagagtaaagaataatgatgtata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 aaaggaaagaactagaaagaagaggggaggaacaattagagtaaagaataatgatgtata 447
Query: 181 tgaagtgtcacagagaaatccattcttcatatgataactacaaaactttaaaatgtcttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tgaagtgtcacagagaaatccattcttcatatgataactacaaaactttaaaatgtcttc 387
Query: 241 atagctttgggtagaaaagctttttaaaataggtcacaaaatgtactcagaatacaaaga 300
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 386 atagccttgggtagaaaagctttttaaaataggtcacaaaatgtactcagaatacataga 327
Query: 301 caaaatgatacagtaagatgcatcggactttaaaacattcacagtaagagataatgctga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 caaaatgatacagtaagatgcatcggactttaaaacattcacagtaagagataatgctga 267
Query: 361 gaacctcaaaggctggatccatgagagcaacttctgtgagttctctccacaccatacata 420
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 266 gaacctcaaaggctggatccatgagagcaacctctgtgagttctctccacaccatacata 207
Query: 421 cacttgatttttaaaaattacttaaaatattttatacactgtattttgatcatatttttg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 cacttgatttttaaaaattacttaaaatattttatacactgtattttgatcatatttttg 147
Query: 481 cactttccccacacccttgtagagcctctccacatccctcctcacccagcttcatgttgt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 cactttccccacacccttgtagagcctctccacatccctcctcacccagcttcatgttgt 87
Query: 541 ctctcttcctttctttctctccaaaacttgaaaacagc 578
||||||||||||||||||||||||||||||||||||||
Sbjct: 86 ctctcttcctttctttctctccaaaacttgaaaacagc 49
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 978
Length adjustment: 10
Effective length of query: 568
Effective length of database: 968
Effective search space: 549824
Effective search space used: 549824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
