BAC Information

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BAC

Clone NameMSMg01-108O04
Chromosome13 (Build37)
Map Location 64,779,141 - 64,883,479
singlet/doubletdoublet
Overlap geneLOC631470, Cntnap3
Upstream geneC030010C08Rik, 0610007P08Rik, 9330134C04Rik, EG665575, Hsd17b3, Slc35d2, Zfp367, Habp4, Cdc14b, 1110018J18Rik, Ctsl, Ccrk, LOC665612, 1190003K10Rik, LOC218298, Ppia-ps13_866.1, LOC238678
Downstream geneEG432767, 4930458L03Rik, LOC218301, LOC628515, 4932441B19Rik, Gm274, Hiatl1, LOC100042311, Olfr465-ps1, Olfr466, Nlrp4f, ENSMUSG00000074847, Zfp369, LOC100042347, LOC100042341, LOC665738, EG665742, LOC665750, LOC665753, EG544944, EG665767, LOC665777, EG628648, LOC665809, LOC100042404, LOC628722
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-108O04.T7 (MSMg01no108_o04.b1)MSMg01-108O04.TJ (MSMg01no108_o04.g1)
ACCAG322214AG322215
length699699
length of high quality
(start - end)		654 (46 - 699)627 (73 - 699)
definitionCHROMAT_FILE: MSMg01no108_o04.b1 PHD_FILE: MSMg01no108_o04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:53 2005CHROMAT_FILE: MSMg01no108_o04.g1 PHD_FILE: MSMg01no108_o04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:53 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,883,131 - 64,883,479)(64,779,141 - 64,779,767)
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTGATCTTTCCAGACTTTTATCATGAATGGGTGTTGGATTTTGTC
AAATGCTTTTTCTGCATCTAACGAGATGATCATGTGGTTTTTGTCTTTGA
GTTTGTTTATATAATGGATTACATTGATGGATTTCCATATATTGAACCAT
CCCTGCATCCCTGGGATGAAACCTACTTGGTCAGGATGGATGATTGTTTT
GATGTGTTCTTGGATTCGGTTAGCAAGAACTTTATTGAGGATTTTTGCAT
CGATATTCATAAGGGAAATCGGTCTGAAGTTCTCTATCTTTGTTGGGTCT
TTTTGTGGTTTAGGTATCAGAGTAATTGTTACTTCATAGAATGAGTTGGG
TCGAGTACCTTCCGTTTCTATTTTGTGGAATAGTTTGTGAAGAACTGGAA
TTAGGTCTTCTTTGAAGGTCTGATAGAACTGTGCACTAAACCCGTCTGGT
CCTGGGCTTTTTTTGGCTGGGAGACTATTAATGACTGCTTCTATTTCTTT
CAGTCCTCATAACTGACATGATACAATGGTTGCAGTGGTCCCTGATCTTC
TCCTATCCTTGTGCTTGCAATCAGGTTGTCCCAACAACAGCTCTAGCTTT
GGATGTGAACATTCTTTTGGAGGCTTCCAGGGCTGCCTGAGGCTCATCT

AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCATGTCTGTGAATCCTGCTACACATAAC
AACCTTTTGATCAATCTGGGAAATGATAGTGTGGTGATAACATTAAAGAA
TCGATAAGCTCTCAACAAAAGGGAATGGGCAGAAAATTAAATAACAAGAG
GAAGACATCAAGAAGATGAAGCATAGCCAAGGTGGAAATGGTCAATTTTG
TCAAAAACTCTGGGACTCCTGATGCTTTCATCTGTCCTCTGAGGCTAGGT
CTCAGTCTTGCCCAGACCATAATAAGATTCAAAGGAATAAAATATGGTAT
GAATAGGAATGAGCATGGTGCAAAACTACTGAATAAAGATGAAAAGCACG
AAGCTAAAAGGAGGAATCCTGATGACCACATTTAGGAGTCATTTGATAGA
ATTTTATAAACATGTCTGCCAACTTCTGCAAACCTGTAGTTAGAGAAAAA
CAACAAGAAAGACAAACTAACAACAAACACAAGAAGTGCCAGGGGGATTC
ACAGCATCAGTCTGTTTATGTCCTCAGCTGACAGAAACACAGAAAAACTC
AACTTCAATAATGTGTATCTTTAAATCCTTGATGTTTTAAAAACACAGCA
GGATGCCAAAGAGGGATGAATCCAAAAGCTACAAAAGAGAAATTTCGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no108_o04.b1 MSMg01no108_o04.b1 CHROMAT_FILE:
MSMg01no108_o04.b1 PHD_FILE: MSMg01no108_o04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:53 2005
         (654 letters)



>mm_chr13_64882426_64883479
          Length = 1054

 Score =  675 bits (349), Expect = 0.0
 Identities = 349/349 (100%)
 Strand = Plus / Minus

                                                                        
Query: 306  ttttgtggtttaggtatcagagtaattgttacttcatagaatgagttgggtcgagtacct 365
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1054 ttttgtggtttaggtatcagagtaattgttacttcatagaatgagttgggtcgagtacct 995

                                                                        
Query: 366  tccgtttctattttgtggaatagtttgtgaagaactggaattaggtcttctttgaaggtc 425
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 994  tccgtttctattttgtggaatagtttgtgaagaactggaattaggtcttctttgaaggtc 935

                                                                        
Query: 426  tgatagaactgtgcactaaacccgtctggtcctgggctttttttggctgggagactatta 485
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 934  tgatagaactgtgcactaaacccgtctggtcctgggctttttttggctgggagactatta 875

                                                                        
Query: 486  atgactgcttctatttctttcagtcctcataactgacatgatacaatggttgcagtggtc 545
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 874  atgactgcttctatttctttcagtcctcataactgacatgatacaatggttgcagtggtc 815

                                                                        
Query: 546  cctgatcttctcctatccttgtgcttgcaatcaggttgtcccaacaacagctctagcttt 605
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814  cctgatcttctcctatccttgtgcttgcaatcaggttgtcccaacaacagctctagcttt 755

                                                             
Query: 606  ggatgtgaacattcttttggaggcttccagggctgcctgaggctcatct 654
            |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754  ggatgtgaacattcttttggaggcttccagggctgcctgaggctcatct 706


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1054
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1044
Effective search space:   672336
Effective search space used:   672336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no108_o04.g1 MSMg01no108_o04.g1 CHROMAT_FILE:
MSMg01no108_o04.g1 PHD_FILE: MSMg01no108_o04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:53 2005
         (627 letters)



>mm_chr13_64778941_64779967
          Length = 1027

 Score = 1212 bits (627), Expect = 0.0
 Identities = 627/627 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgtctgtgaatcctgctacacataacaaccttttgatcaatctgggaaatgatagtgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgtctgtgaatcctgctacacataacaaccttttgatcaatctgggaaatgatagtgt 260

                                                                       
Query: 61  ggtgataacattaaagaatcgataagctctcaacaaaagggaatgggcagaaaattaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtgataacattaaagaatcgataagctctcaacaaaagggaatgggcagaaaattaaat 320

                                                                       
Query: 121 aacaagaggaagacatcaagaagatgaagcatagccaaggtggaaatggtcaattttgtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacaagaggaagacatcaagaagatgaagcatagccaaggtggaaatggtcaattttgtc 380

                                                                       
Query: 181 aaaaactctgggactcctgatgctttcatctgtcctctgaggctaggtctcagtcttgcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaaactctgggactcctgatgctttcatctgtcctctgaggctaggtctcagtcttgcc 440

                                                                       
Query: 241 cagaccataataagattcaaaggaataaaatatggtatgaataggaatgagcatggtgca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagaccataataagattcaaaggaataaaatatggtatgaataggaatgagcatggtgca 500

                                                                       
Query: 301 aaactactgaataaagatgaaaagcacgaagctaaaaggaggaatcctgatgaccacatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaactactgaataaagatgaaaagcacgaagctaaaaggaggaatcctgatgaccacatt 560

                                                                       
Query: 361 taggagtcatttgatagaattttataaacatgtctgccaacttctgcaaacctgtagtta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taggagtcatttgatagaattttataaacatgtctgccaacttctgcaaacctgtagtta 620

                                                                       
Query: 421 gagaaaaacaacaagaaagacaaactaacaacaaacacaagaagtgccagggggattcac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gagaaaaacaacaagaaagacaaactaacaacaaacacaagaagtgccagggggattcac 680

                                                                       
Query: 481 agcatcagtctgtttatgtcctcagctgacagaaacacagaaaaactcaacttcaataat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agcatcagtctgtttatgtcctcagctgacagaaacacagaaaaactcaacttcaataat 740

                                                                       
Query: 541 gtgtatctttaaatccttgatgttttaaaaacacagcaggatgccaaagagggatgaatc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gtgtatctttaaatccttgatgttttaaaaacacagcaggatgccaaagagggatgaatc 800

                                      
Query: 601 caaaagctacaaaagagaaatttcgtg 627
           |||||||||||||||||||||||||||
Sbjct: 801 caaaagctacaaaagagaaatttcgtg 827


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space:   627489
Effective search space used:   627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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