BAC Information

Click to search

BAC

Clone NameMSMg01-110C07
Chromosome13 (Build37)
Map Location 22,194,654 - 22,195,258
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1369-ps1, Olfr42, Olfr1368, Trim27, Gpx5, LOC625752, Gpx6, Olfr1367, Zfp96, LOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302, LOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622, LOC665634, Zfp184, Gm24, Prss16, Hist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj, LOC665690, V1rh17, V1rh2
Downstream geneV1ri8, LOC632534, V1ri1, V1ri9, OTTMUSG00000000480, V1ri6, LOC665726, V1rh21, V1ri3, V1rh4, V1rh3, V1rh1, LOC665749, V1ri4, V1ri7, V1rh11, OTTMUSG00000000494, V1rh8, V1rh7, LOC382740, LOC432735, V1rh9, OTTMUSG00000000514, V1rh10, V1rh20, V1rh18, V1rh6, V1rh5, V1ri2, V1ri10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-110C07.T7 (MSMg01no110_c07.b1)MSMg01-110C07.TJ (MSMg01no110_c07.g1)
ACCAG323145AG323146
length700708
length of high quality
(start - end)		558 (50 - 607)613 (90 - 702)
definitionCHROMAT_FILE: MSMg01no110_c07.b1 PHD_FILE: MSMg01no110_c07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:13:37 2005CHROMAT_FILE: MSMg01no110_c07.g1 PHD_FILE: MSMg01no110_c07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:13:37 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NNGGGTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTATCACTTTTTTGTGTAAAGTGTAATGTGTGCTTTGAACTT
TAGTAAAGTTTCTTTTATAAAAGTTGGTGTCCTTGCTTTTAGAGCATAGA
TTGTCCAGAAATGAATTATTCTTGGTAGATTTTAACTTTGATGAGAATGA
ATTGTCCTTCCTTATCCTTTTTGAAATTGTTTGGTTGAAAGTTGATTTTA
TTTCATATTAGAATGGCTAGTCCAGCTTGTTTCTTGGGACCATTTGCTTG
GAAAATTGTTTTCTAGCCCTTTACTCTGATGTAGAGTCTGTCTTTGACAC
TGAGGTACATTTCCTGTATGCAGCAAAATGCTGGGTCCTGTTTGCATATC
CAGTCTGTTAGTCTCTGTCTCTTTACTGGGGAACTGGGTCTATTGATGTT
AAAAGATATTAAGGAATAGGGATTGTTGCTTCCTGTTATTTTTTATGTTT
TGTGGTTATGGTCCTTACAATTTGTTAAAAGAAGATTACTTCCTTGCTTT
TTCTAGGGCATAACTGCCTTCTTGCATTATTGTTTGCCATCTATTATCTT
ATAGGGCTGGATTTGTACAAAGATATTCTGCAAATTTGCTTTTGTCATGG
AACACCTTTGCTTTCCCATGCTAGGCATTTGAGAGCTTTCTTACTTATAC


NNAACTATTTANNNNACGATGATAATXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGAATCAGCC
ATGGACACAAGTAATATTGCAGACTAGGTCCCTGAAACTTTTTTTTTTCC
TGTATCCTCTGGGTTATTTTATGTGCACTGACAGGTGAGGTTGGTAACTG
GTATTCAAAGCTAAAATTTAAAGGAGATTATTTTTAAGCTTTACTCTAGC
AAAACTGACTTGCTTAAGTTCCAGTGTGTGTGTGTGTTTGTGTGTGTGCG
CTCATTCATGTATTATCCTTGTTACCTCTCACCATAGTTGAATTTAATCC
CTTTCCTATAACCAAAAATTCCTCCTCTGATTCTCATTCCATTCCTTTAT
ATTCCCCCACCCAATTCCTAAATTCCAAGGCTCATGCTGACCCTGTCCTC
CTTCCCCACATCACACACAGACACTGGGAAACTCTGTTGATCAACATGTA
CAGCAACTCTCCCACTTAGTAACTTTACCTTCTAAGTCTATTTTCCTCTG
TTTGATATTCCTTTCTTATCTGATTCTTGAATAGTACAATAATTTCTGGA
ATTACATTTGACACCAAAGCTTTATAACTTCAATTTCTACATCTTAATAT
ATTGTTTTCATATTGACCATTTTGTGATTTCACTCTGTATGAATGTTCAC
TAGATATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no110_c07.g1 MSMg01no110_c07.g1 CHROMAT_FILE:
MSMg01no110_c07.g1 PHD_FILE: MSMg01no110_c07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:37 2005
         (613 letters)



>mm_chr13_22194454_22195467
          Length = 1014

 Score =  949 bits (491), Expect = 0.0
 Identities = 579/613 (94%), Gaps = 12/613 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgaatcagccatggacacaagtaatattgcagactaggtccctgaaactttttttttt- 59
           ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| 
Sbjct: 201 atgaagcagccatggacacaagtaatattgcagactaggtccctgaatcttttttttttt 260

                                                                       
Query: 60  cctgtatcctctgggttattttatgtgcactgacaggtgaggttggtaactggtattcaa 119
           |||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 cctgtaccctctaggttattttatgtgcactgacaggcgaggttggtaactggtattcaa 320

                                                                       
Query: 120 agctaaaatttaaaggagattatttttaagctttactctagcaaaactgacttgcttaag 179
           ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 321 agctaaaatttaaaggaaattatttttaagccttactctagcaaaactgacttgcttaag 380

                                                                       
Query: 180 ttccagtgtgtgtgtgtgtttgtgtgtgtgcgctcattcatgtattatccttgtt-acct 238
           |||||||||||||||||||      || |||  |||||||||||||||||||||| ||||
Sbjct: 381 ttccagtgtgtgtgtgtgt------gtctgc--tcattcatgtattatccttgtttacct 432

                                                                       
Query: 239 ctcaccatagttgaatttaatccct--ttcctataaccaaaaattcctcctctgattctc 296
           |||||||||||||||||||||| |   |||||||||||||||||||||||||||||||||
Sbjct: 433 ctcaccatagttgaatttaatcacaagttcctataaccaaaaattcctcctctgattctc 492

                                                                       
Query: 297 attccattcctttatattcccccacccaattcctaaattccaaggctcatgctgaccctg 356
           ||||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||
Sbjct: 493 attccattcctttatattcccccacccaattcctaaattctgaggctcatggtgaccctg 552

                                                                       
Query: 357 tcctccttccccacatcacacacagacactgggaaactctgttgatcaacatgtacagca 416
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 553 tcctccttccccacatcacacacagacactgggaaactctgttgatcaacatgtgcagca 612

                                                                       
Query: 417 actctcccacttagtaactttaccttctaagtctattttcctctgtttgatattcctttc 476
            |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 613 tctctcccacttagtaactttaccttctaagtctattctcctctgtttgatattcctttc 672

                                                                       
Query: 477 ttatctgattcttgaatagtacaataatttctggaattacatttgacaccaaagctttat 536
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 673 ttatctgattcttgaatagtacaacaatttctggaattacatttgacaccaaagctttat 732

                                                                       
Query: 537 aacttcaatttctacatcttaatatattgttttcatattgaccattttgtgatttcactc 596
           |||||||||||||||||||||  ||||||||||| ||||||||||||||  |||||||||
Sbjct: 733 aacttcaatttctacatcttagcatattgttttcctattgaccattttgcaatttcactc 792

                        
Query: 597 tgtatgaatgttc 609
           |||||||||||||
Sbjct: 793 tgtatgaatgttc 805


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1014
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1004
Effective search space:   605412
Effective search space used:   605412
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |