BAC Information

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BAC

Clone NameMSMg01-110C22
Chromosome13 (Build37)
Map Location 50,083,301 - 50,083,918
singlet/doubletsinglet
Overlap genenone
Upstream geneWnk2, Ninj1, 1110007C09Rik, Susd3, Fgd3, Bicd2, Ippk, Cenpp, Tes3-ps, Ecm2, Aspn, Omd, Ogn, Nol8, Iars, LOC667488, LOC670357, EG638833, Gm272, EG667503, EG667507, LOC100040099
Downstream geneLOC625110, LOC676907, LOC667546, LOC667552, LOC100040085, LOC100040159, LOC100040176, LOC100040118, Gm906, 2310081J21Rik, LOC676954, LOC667625, LOC667632, EG667637, Fbxw17, Gm806, EG639044, Gm904, LOC100040315, EG667693, LOC100040161, LOC100040190, EG667712, LOC676997, EG667717
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-110C22.T7 (MSMg01no110_c22.b1)MSMg01-110C22.TJ (MSMg01no110_c22.g1)
ACCAG323174AG323175
length728705
length of high quality
(start - end)
222 (60 - 281)618 (88 - 705)
definitionCHROMAT_FILE: MSMg01no110_c22.b1 PHD_FILE: MSMg01no110_c22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:13:41 2005CHROMAT_FILE: MSMg01no110_c22.g1 PHD_FILE: MSMg01no110_c22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:13:41 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
GATTGCCGNNCAGTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCGCGGAATTCCTGATCTTTCCAAACTTTTATCTTGAATGGG
TGTTGGATCTTGTCAAATGCTTTTTCTGCATCTAACGAGATGATCATGTG
GTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACATTGATGGATTTTC
GTATATTAAACCATCCCTGCATCCCTGGAATAAAACCTACTTGGTCAGGA
TGGATGATTGCTTTAATGTGTTCTTGGGTTCGGTTAGCGAGAATTTTATT
AAGGATTTTTGCATCGATATTCATAAGAGAAATTGGTCTGAAGTTCTCTA
TCTTTGTTGGATCTTTCTGTGGTTTAGGTATCAGAGGAATAGTGGCTTCA
TAAAATGAGTTGTGTATAGTACCTTCTACTTCCATCTTGTGAAATAGTTT
GTGCAGAACTGGAATTAGATCTTCTTTGAAGGTCTGATAGAACTCTGCAC
TAAACCCGTCTGCTCCTGGGCTTTTTTTGGCTGGAAGACGATTAATAACT
GCTTCTATGTCTTTAGGTGATATGACACTGTTTACAAGGTCAACTCTGAT
CTGATTCATCTTTGCTTGTTGGTTATCTTTCAAGATATTGACCATTTCGA
CCAGGTATTTCCCGTGTGCCCCCTTCTTCCTCCCATTTTAAGTAGCCCAC
TGTTCTTTCTTGTTTTTCTTTATACTTC
NCCAATACCTTTNNCCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTCTGGACATGA
CCTAATTGAAGAAGATCATGATGAGATTCATGCTTTCTGAACATGAGATT
CAGAAGTCCAAGAAAAAGAGATAGCTGCATTGAAGGAATTCAGGGACAGG
AAATCCCCAGGTTTTGTGACACCACAAAGCTGTGGTGGGCCTGGATGTTT
GCTACACTTGTGAGTGTAGTTGGAGCACTGGAGGGATACTGTGCCTCTGT
ATGGGGATTCCCAGGTCCACCTGCCAGCATGGAGCTTCAAGTCTCCCAGG
TGCAAATCTATCTTTCAGATAGCATGTCCTGTGGCACTTGCTGTAATATA
AGGGGAATGACAGGACTGGATGGAGGGGCAAGGAGAGCGTACATGGAGAG
ATAACCTACCTCCATTCCCCTTGCTCACATTCAGTGCTTGAGCACTAGAG
TCCTAGCATGCGTGGGGAGTTACAAGAGGATGCCTCACTCCTTCATGTTC
TTATTTCTTGACCTTATCCTACATAAATATCTCCAGGAAGTAAATATGGC
AGAAAAAAATGTGGACGACACCAAGACTCCATCACAAAGTATGAAAATGT
AAGAAATCCATCTGTCTTGTGAAATTTTTTCCCTAAAAAATGTGAGGTCG
CCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no110_c22.g1 MSMg01no110_c22.g1 CHROMAT_FILE:
MSMg01no110_c22.g1 PHD_FILE: MSMg01no110_c22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:41 2005
         (618 letters)



>mm_chr13_50083101_50084118
          Length = 1018

 Score = 1141 bits (590), Expect = 0.0
 Identities = 611/618 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttctggacatgacctaattgaagaagatcatgatgagattcatgctttctgaacatgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 cttctggacatgacctaattgaagaagatcatgatgagattcatgctttctgaacatgag 759

                                                                       
Query: 61  attcagaagtccaagaaaaagagatagctgcattgaaggaattcagggacaggaaatccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 attcagaagtccaagaaaaagagatagctgcattgaaggaattcagggacaggaaatccc 699

                                                                       
Query: 121 caggttttgtgacaccacaaagctgtggtgggcctggatgtttgctacacttgtgagtgt 180
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 698 caggttttgtgacaccacaaagctgtggtgggcctggatgtgtgctacacttgtgagtgt 639

                                                                       
Query: 181 agttggagcactggagggatactgtgcctctgtatggggattcccaggtccacctgccag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 agttggagcactggagggatactgtgcctctgtatggggattcccaggtccacctgccag 579

                                                                       
Query: 241 catggagcttcaagtctcccaggtgcaaatctatctttcagatagcatgtcctgtggcac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 catggagcttcaagtctcccaggtgcaaatctatctttcagatagcatgtcctgtggcac 519

                                                                       
Query: 301 ttgctgtaatataaggggaatgacaggactggatggaggggcaaggagagcgtacatgga 360
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 518 ttgctgtaatataaggggaatgacaggactggatggaggggcaaggagagtgtacatgga 459

                                                                       
Query: 361 gagataacctacctccattccccttgctcacattcagtgcttgagcactagagtcctagc 420
           |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 458 gagataccctacctccattccccttgctcacatacagtgcttgagcactagagtcctagc 399

                                                                       
Query: 421 atgcgtggggagttacaagaggatgcctcactccttcatgttcttatttcttgaccttat 480
           ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 398 atgcgtggggagttacaagaggatgcctcactccttcgtgtgcttatttcttgaccttat 339

                                                                       
Query: 481 cctacataaatatctccaggaagtaaatatggcagaaaaaaatgtggacgacaccaagac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 cctacataaatatctccaggaagtaaatatggcagaaaaaaatgtggacgacaccaagac 279

                                                                       
Query: 541 tccatcacaaagtatgaaaatgtaagaaatccatctgtcttgtgaaattttttccctaaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 tccatcacaaagtatgaaaatgtaagaaatccatctgtcttgtgaaattttttccctaaa 219

                             
Query: 601 aaatgtgaggtcgcctcc 618
           |||||||||||| |||||
Sbjct: 218 aaatgtgaggtcacctcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1018
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1008
Effective search space:   612864
Effective search space used:   612864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)